Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol CLF
Gene Symbol Synonym OsSET24, SDG711, EZ1, OsCLF, OsSDG711
Gene Name Synonym SET protein 24, polycomb protein EZ1, SET DOMAIN GROUP 711
Protein Name
Allele sdg711
Chromosome No. 6
Explanation Polycomb group protein, Enhancer of Zeste(E(z)) like gene, E(z)-like gene. AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). H3K27 methyltransferase. a polycom repressive complex 2(PRC2) key subunit. GO:2000904: regulation of starch metabolic process.
Trait Class Vegetative organ - Leaf
Reproductive organ - Heading date
Reproductive organ - panicle
Reproductive organ - Spikelet, flower, glume, awn
Seed - Morphological traits - Endosperm
Seed - Morphological traits
Seed - Physiological traits - Storage substances
cDNA Accession No. AK111743
MSU ID LOC_Os06g16390.1
RAP ID Os06g0275500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Liu X., Luo J., Li T., Yang H., Wang P., Su L., Zheng Y., Bao C., Zhou C.
Rice (N Y) 2021  14(1)  25
SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other Histone Modifications.
Zhang P., Zhu C., Geng Y., Wang Y., Yang Y., Liu Q., Guo W., Chachar S., Riaz A., Yan S., Yang L., Yi K., Wu C., Gu X.
Plant Cell 2021   
Rice and Arabidopsis homologs of yeast CHROMOSOME TRANSMISSION FIDELITY PROTEIN 4 commonly interact with Polycomb complexes but exert divergent regulatory functions.
Wang L., Yuan J., Ma Y., Jiao W., Ye W., Yang D.L., Yi C., Chen Z.J.
Mol Plant 2018  11(2)  300-314
Rice Interploidy Crosses Disrupt Epigenetic Regulation, Gene Expression, and Seed Development.
Huang X., Lu Z., Wang X., Ouyang Y., Chen W., Xie K., Wang D., Luo M., Luo J., Yao J.
Plant J. 2016   
Imprinted gene OsFIE1 modulates rice seed development by influencing nutrient metabolism and modifying genome H3K27me3.
Liu X., Zhou S., Wang W., Ye Y., Zhao Y., Xu Q., Zhou C., Tan F., Cheng S., Zhou D.X.
Plant Cell 2015  27(5)  1428-44
Regulation of histone methylation and reprogramming of gene expression in the rice inflorescence meristem.
Ma K., Zhang D., Liu Y., Ouyang Y., Li J., Hu C., Yao J.
Plant Sci. 2015  234  86-96
Ectopic expression of EbFIE from apomictic Eulaliopsis binata in rice results in pleiotropic phenotypes likely due to interaction with OsCLF.
Chen X., Liu X., Zhao Y., Zhou D.X.
Sci Rep 2015  5  13251
Histone H3K4me3 and H3K27me3 regulatory genes control stable transmission of an epimutation in rice.
Liu X., Zhou C., Zhao Y., Zhou S., Wang W., Dao-Xiu Zhou
Front Plant Sci 2014  5  591
The rice enhancer of zeste [E(z)] genes SDG711 and SDG718 are respectively involved in long day and short day signaling to mediate the accurate photoperiod control of flowering time.
Lu Z., Huang X., Ouyang Y., Yao J.
PLoS ONE 2013  8(6)  e65426
Genome-wide identification, phylogenetic and co-expression analysis of OsSET gene family in rice.
Nallamilli B.R., Zhang J., Mujahid H., Malone B.M., Bridges S.M., Peng Z.
PLoS Genet. 2013  9(3)  e1003322
Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis.
Zhang L., Cheng Z., Qin R., Qiu Y., Wang J.L., Cui X., Gu L., Zhang X., Guo X., Wang D., Jiang L., Wu C.Y., Wang H., Cao X., Wan J.
Plant Cell 2012  24(11)  4407-21
Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.
Sanyal,A., Ammiraju,J.S., Lu,F., Yu,Y., Rambo,T., Currie,J., Kollura,K., Kim,H.R., Chen,J., Ma,J., San Miguel,P., Mingsheng,C., Wing,R.A. and Jackson,S.A.
Mol. Biol. Evol. 2010  27(11)  2487-2506
Orthologous Comparisons of the Hd1 Region across Genera Reveal Hd1 Gene Lability within Diploid Oryza Species and Disruptions to Microsynteny in Sorghum
Luo M,Platten D,Chaudhury A,Peacock WJ,Dennis ES
Mol Plant 2009  2(4)  711-23
Expression, imprinting, and evolution of rice homologs of the polycomb group genes.
TextPresso Search Search textpresso for CLF ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology starch metabolic process( GO:0005982 )
endosperm development( GO:0009960 )
seed development( GO:0048316 )
DNA binding( GO:0003677 )
single-stranded RNA binding( GO:0003727 )
genetic imprinting( GO:0006349 )
leaf morphogenesis( GO:0009965 )
vegetative to reproductive phase transition( GO:0010228 )
histone methylation( GO:0016571 )
PcG protein complex( GO:0031519 )
transcription factor activity( GO:0003700 )
DNA methylation( GO:0006306 )
vernalization response( GO:0010048 )
flower development( GO:0009908 )
inflorescence development( GO:0010229 )
long-day photoperiodism, flowering( GO:0048574 )
regulation of long-day photoperiodism, flowering( GO:0048586 )
DNA mediated transformation( GO:0009294 )
gene silencing by RNA( GO:0031047 )
negative regulation of molecular function, epigenetic( GO:0045857 )
histone H3-K9 methylation( GO:0051567 )
embryonic development( GO:0009790 )
Trait Ontology panicle size( TO:0006032 )
flowering time( TO:0002616 )
inflorescence development trait( TO:0000621 )
seed development trait( TO:0000653 )
starch content( TO:0000696 )
seed size( TO:0000391 )
Plant Ontology inflorescence meristem( PO:0000230 )
endosperm( PO:0009089 )
tegmen( PO:0020056 )
inflorescence development stage( PO:0001083 )
seed development stage( PO:0001170 )
endosperm development stage( PO:0007633 )
Related Strains
Phenotype images
Last updated
Jan 17, 2022