Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PRR59
Gene Symbol Synonym OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38
Gene Name Synonym pseudo-response regulator 5, CCT domain-containing gene 38, CCT (CO, CO-LIKE and TOC1) domain protein 38, CCT domain protein 38
Protein Name
Allele osprr59, oscct38
Chromosome No. 11
Explanation a rice ortholog of Arabidopsis gene for circadian clock component.
Trait Class Reproductive organ - Heading date
Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. AK120059
MSU ID LOC_Os11g05930.1
RAP ID Os11g0157600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Li J., Qiu J.X., Zeng Q.H., Yi Zhuang, Zhang N., Xu S.X., Jin J., Dong Z.C., Chen L., Huang W.
Cell Rep 2023  42(7)  112765
OsTOC1 plays dual roles in the regulation of plant circadian clock by functioning as a direct transcription activator or repressor.
Sun C., Liu S., He C., Zhong C., Liu H., Luo X., Li K., Zhang K., Wang Q., Chen C., Tang Y., Yang B., Chen X., Xu P., Zou T., Li S., Qin P., Wang P., Chu C., Deng X.
Int J Mol Sci 2022  23(12) 
Crosstalk between the Circadian Clock and Histone Methylation.
Sun C., Zhang K., Zhou Y., Xiang L., He C., Zhong C., Li K., Wang Q., Yang C., Wang Q., Chen C., Chen D., Wang Y., Liu C., Yang B., Wu H., Chen X., Li W., Wang J., Xu P., Wang P., Fang J., Chu C., Deng X.
Plant Biotechnol. J. 2021  19(8)  1644-1657
Dual function of clock component OsLHY sets critical day length for photoperiodic flowering in rice.
Wei H., Wang X., He Y., Xu H., Wang L.
EMBO J. 2021  40(3)  e105086
Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis.
Zhang J., Fan X., Hu Y., Zhou X., He Q., Liang L., Xing Y.
J Integr Plant Biol 2020   
Global analysis of CCT family knockout mutants identifies four genes involved in regulating heading date in rice.
Zhu C., Peng Q., Fu D., Zhuang D., Yu Y., Duan M., Xie W., Cai Y., Ouyang Y., Lian X., Wu C.
Plant Cell 2018  30(10)  2352-2367
The E3 Ubiquitin Ligase HAF1 Modulates Circadian Accumulation of EARLY FLOWERING3 to Control heading date in Rice under Long-Day Conditions.
Zhang L., Li Q., Dong H., He Q., Liang L., Tan C., Han Z., Yao W., Li G., Zhao H., Xie W., Xing Y.
Sci Rep 2015  5  7663
Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice.
Matsuzaki J., Kawahara Y., Izawa T.
Plant Cell 2015  27(3)  633-48
Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions.
Yang Y., Peng Q., Chen G.X., Li X.H., Wu C.Y.
Mol Plant 2013  6(1)  202-15
OsELF3 is Involved in Circadian Clock Regulation for Promoting Flowering under Long-Day Conditions in Rice.
Cockram J., Thiel T., Steuernagel B., Stein N., Taudien S., Paul C Bailey, Donal M O'Sullivan
PLoS ONE 2012  7(9)  e45307
Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae.
Zhao J., Huang X., Ouyang X., Chen W., Du A., Zhu L., Wang S., Deng X.W., Li S.
PLoS ONE 2012  7(8)  e43705
OsELF3-1, an Ortholog of Arabidopsis EARLY FLOWERING 3, Regulates Rice Circadian Rhythm and Photoperiodic Flowering.
Tsai Y.C., Weir N.R., Hill K., Zhang W., Kim H.J., Shiu S.H., Schaller G.E., Kieber J.J.
Plant Physiol. 2012  158(4)  1666-84
Characterization of genes involved in cytokinin signaling and metabolism from rice.
Izawa T. , Mihara M. , Suzuki Y. , Gupta M. , Itoh H. , Nagano A.J. , Motoyama R. , Sawada Y. , Yano M. , Hirai M.Y. , Makino A. , Nagamura Y.
Plant Cell 2011  23(5)  1741-55
Os-GIGANTEA Confers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field.
Murakami M, Tago Y, Yamashino T, Mizuno T.
Plant Cell Physiol. 2007  48(1)  110-21
Comparative Overviews of Clock-Associated Genes of Arabidopsis thaliana and Oryza sativa.
Pareek A, Singh A, Kumar M, Kushwaha HR, Lynn AM, Singla-Pareek SL.
Plant Physiol. 2006  142(2)  380-97
Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis.
Murakami,M., Matsushika,A., Ashikari,M., Yamashino,T. and Mizuno,T.
Biosci. Biotechnol. Biochem. 2005  69(2)  410-414
Circadian-Associated Rice Pseudo Response Regulators (OsPRRs): Insight into the Control of Flowering Time.
Murakami,M., Ashikari,M., Miura,K., Yamashino,T. and Mizuno,T.
Plant Cell Physiol. 2003  44(11)  1229-1236
The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm.
TextPresso Search Search textpresso for PRR59 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology positive regulation of short-day photoperiodism, flowering( GO:0048576 )
negative regulation of long-day photoperiodism, flowering( GO:0048579 )
two-component response regulator activity( GO:0000156 )
regulation of transcription, DNA-dependent( GO:0006355 )
circadian rhythm( GO:0007623 )
Trait Ontology days to heading( TO:0000137 )
flowering time( TO:0002616 )
plant height( TO:0000207 )
spikelet number( TO:0000456 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Dec 26, 2023