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Basic Information
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CGSNL Gene Symbol
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PRR95
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Gene Symbol Synonym
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OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33
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CGSNL Gene Name
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PSEUDO-RESPONSE REGULATOR 95
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Gene Name Synonym
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pseudo-response regulator 2, CCT domain-containing gene 33, CCT (CO, CO-LIKE and TOC1) domain protein 33, CCT domain protein 33
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Protein Name
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Allele
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osprr95, osprr95-1, osprr95-2
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Chromosome No.
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9
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Explanation
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AB189041. Q689G6. MH09t0440700. a rice ortholog of Arabidopsis gene for circadian clock component. OsCaM1 target gene. OsPRR5 (OsPRR59) in Lu et al. 2020. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. PO:0030123: panicle inflorescence. GO:0098755: maintenance of seed dormancy by absisic acid.
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Trait Class
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Tolerance and resistance - Stress tolerance
Character as QTL - Germination
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK067314
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MSU ID
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LOC_Os09g36220.1
LOC_Os09g36220.2
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RAP ID
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Os09g0532400
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Saha S.R., Islam S.M.S., Itoh K.
Genes Genet. Syst. 2024
Identification of abiotic stress responsive genes: A genome wide analysis of the cytokinin response regulator gene family in rice.
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Wang Y., Wu F., Lin Q., Sheng P., Wu Z., Jin X., Chen W., Li S., Luo S., Duan E., Wang J., Ma W., Ren Y., Cheng Z., Zhang X., Lei C., Guo X., Wang H., Zhu S., Wan J.
Plant Physiol. 2023 191(3) 1857-1870
A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.
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Li J., Qiu J.X., Zeng Q.H., Yi Zhuang, Zhang N., Xu S.X., Jin J., Dong Z.C., Chen L., Huang W.
Cell Rep 2023 42(7) 112765
OsTOC1 plays dual roles in the regulation of plant circadian clock by functioning as a direct transcription activator or repressor.
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Sun C., Liu S., He C., Zhong C., Liu H., Luo X., Li K., Zhang K., Wang Q., Chen C., Tang Y., Yang B., Chen X., Xu P., Zou T., Li S., Qin P., Wang P., Chu C., Deng X.
Int J Mol Sci 2022 23(12)
Crosstalk between the Circadian Clock and Histone Methylation.
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Li J., Wang D., Sun S., Sun L., Zong J., Lei Y., Yu J., Liang W., Zhang D.
Plant Physiol. 2022 189(2) 955-971
The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.
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Cai Z., Zhang Y., Tang W., Chen X., Lin C., Liu Y., Ye Y., Wu W., Duan Y.
Front Plant Sci 2022 13 853042
LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.
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Desai J.S., Lawas L.M.F., Valente A.M., Leman A.R., Grinevich D.O., Jagadish S.V.K., Doherty C.J.
Proc. Natl. Acad. Sci. U.S.A. 2021 118(25)
Warm nights disrupt transcriptome rhythms in field-grown rice panicles.
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Sun C., Zhang K., Zhou Y., Xiang L., He C., Zhong C., Li K., Wang Q., Yang C., Wang Q., Chen C., Chen D., Wang Y., Liu C., Yang B., Wu H., Chen X., Li W., Wang J., Xu P., Wang P., Fang J., Chu C., Deng X.
Plant Biotechnol. J. 2021 19(8) 1644-1657
Dual function of clock component OsLHY sets critical day length for photoperiodic flowering in rice.
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Lu C.A., Huang C.K., Huang W.S., Huang T.S., Liu H.Y., Chen Y.F.
Plant Physiol. 2020 182(1) 255-271
DEAD-box RNA helicase 42 Plays a Critical Role in Pre-mRNA Splicing under Cold Stress.
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Zhang J., Fan X., Hu Y., Zhou X., He Q., Liang L., Xing Y.
J Integr Plant Biol 2020
Global analysis of CCT family knockout mutants identifies four genes involved in regulating heading date in rice.
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Yuenyong W., Chinpongpanich A., Comai L., Chadchawan S., Buaboocha T.
BMC Plant Biol. 2018 18(1) 335
Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.
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Matsuzaki J., Kawahara Y., Izawa T.
Plant Cell 2015 27(3) 633-48
Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions.
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Zhang L., Li Q., Dong H., He Q., Liang L., Tan C., Han Z., Yao W., Li G., Zhao H., Xie W., Xing Y.
Sci Rep 2015 5 7663
Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice.
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Suzuki K., Aoki N., Matsumura H., Okamura M., Ohsugi R., Shimono H.
Plant Cell Environ. 2014
Cooling water before panicle initiation increases chilling-induced male sterility and disables chilling-induced expression of genes encoding OsFKBP65 and heat shock proteins in rice spikelets.
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Yang Y., Peng Q., Chen G.X., Li X.H., Wu C.Y.
Mol Plant 2013 6(1) 202-15
OsELF3 is Involved in Circadian Clock Regulation for Promoting Flowering under Long-Day Conditions in Rice.
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Cockram J., Thiel T., Steuernagel B., Stein N., Taudien S., Paul C Bailey, Donal M O'Sullivan
PLoS ONE 2012 7(9) e45307
Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae.
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Pandey D.M., Kim S.R.
Journal of Plant Biology 2012 55 489-497
Identification and expression analysis of hypoxia stress inducible CCCH-type zinc finger protein genes in rice
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Zhao J., Huang X., Ouyang X., Chen W., Du A., Zhu L., Wang S., Deng X.W., Li S.
PLoS ONE 2012 7(8) e43705
OsELF3-1, an Ortholog of Arabidopsis EARLY FLOWERING 3, Regulates Rice Circadian Rhythm and Photoperiodic Flowering.
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Tsai Y.C., Weir N.R., Hill K., Zhang W., Kim H.J., Shiu S.H., Schaller G.E., Kieber J.J.
Plant Physiol. 2012 158(4) 1666-84
Characterization of genes involved in cytokinin signaling and metabolism from rice.
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Izawa T. , Mihara M. , Suzuki Y. , Gupta M. , Itoh H. , Nagano A.J. , Motoyama R. , Sawada Y. , Yano M. , Hirai M.Y. , Makino A. , Nagamura Y.
Plant Cell 2011 23(5) 1741-55
Os-GIGANTEA Confers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field.
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Coudert Y., Bès M., Le T.V., Pré M., Guiderdoni E., Gantet P.
BMC Genomics 2011 12 387
Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
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Murakami M, Tago Y, Yamashino T, Mizuno T.
Plant Cell Physiol. 2007 48(1) 110-21
Comparative Overviews of Clock-Associated Genes of Arabidopsis thaliana and Oryza sativa.
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Pareek A, Singh A, Kumar M, Kushwaha HR, Lynn AM, Singla-Pareek SL.
Plant Physiol. 2006 142(2) 380-97
Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis.
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Murakami,M., Matsushika,A., Ashikari,M., Yamashino,T. and Mizuno,T.
Biosci. Biotechnol. Biochem. 2005 69(2) 410-414
Circadian-Associated Rice Pseudo Response Regulators (OsPRRs): Insight into the Control of Flowering Time.
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Murakami,M., Ashikari,M., Miura,K., Yamashino,T. and Mizuno,T.
Plant Cell Physiol. 2003 44(11) 1229-1236
The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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abscisic acid catabolic process( GO:0046345 )
response to osmotic stress( GO:0006970 )
negative regulation of abscisic acid mediated signaling( GO:0009788 )
abscisic acid mediated signaling( GO:0009738 )
response to abscisic acid stimulus( GO:0009737 )
positive regulation of seed germination( GO:0010030 )
response to alkalinity( GO:0010446 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
circadian rhythm( GO:0007623 )
rhythmic process( GO:0048511 )
regulation of transcription, DNA-dependent( GO:0006355 )
transcription, DNA-dependent( GO:0006351 )
nucleus( GO:0005634 )
two-component response regulator activity( GO:0000156 )
response to cold( GO:0009409 )
response to temperature stimulus( GO:0009266 )
temperature compensation of the circadian clock( GO:0010378 )
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Trait Ontology
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temperature response trait( TO:0000432 )
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 )
drought tolerance( TO:0000276 )
alkali sensitivity( TO:0000481 )
abscisic acid sensitivity( TO:0000615 )
osmotic response sensitivity( TO:0000095 )
germination rate( TO:0000430 )
seedling height( TO:0000019 )
abscisic acid content( TO:0002667 )
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Plant Ontology
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0 seed germination stage( PO:0007057 )
leaf( PO:0025034 )
inflorescence( PO:0009049 )
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Related Strains
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Phenotype images
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Last updated
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Feb 8, 2025
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Update info.