Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SP3
Gene Symbol Synonym OsDof15, Dof15, OsDof-15, DOF15, DLT3, OsDLT3
CGSNL Gene Name SHORT PANICLE 3
Gene Name Synonym Dof zinc factor 15, Dof transcription factor 15, DNA BINDING WITH ONE FINGER 15, Short Panicle 3, DWARF AND LESS TILLERS ON CHROMOSOME 3
Protein Name DOF TRANSCRIPTION FACTOR 15
Allele sp3, osdof15-1, osdof15-2, osdof15-3, osdof15-4, sp3-cri, sp3-cri-1, sp3-cri-2, sp3-cri-3, dlt3
Chromosome No. 3
Explanation TO:0000975: grain width. GO:2000280: regulation of root development. TO:0000832: flag leaf morphology trait.
Trait Class Other
Vegetative organ - Culm
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
Vegetative organ - Root
Seed - Morphological traits - Grain shape
Reproductive organ - Heading date
Vegetative organ - Leaf
Expression
Sequence/Locus
cDNA Accession No. AK063380
MSU ID LOC_Os03g55610.1
RAP ID Os03g0764900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Liu Y., Chen N., Fan X., Xia X., Yao Y., Huang W., Sun J., Huang L., Wang L., Yu H., Li J., Xing Y.
Adv Sci (Weinh) 2025    e08230
SP3 and DEP1 Orchestrate Panicle Architecture by Jointly Regulating APO2 Expression in Rice.
Fan Y., Chen H., Wang B., Li D., Zhou R., Lian W., Shao G., Wei X., Wu W., Liu Q., Sun L., Zhan X., Cheng S., Zhang Y., Cao L.
Plant Physiol. 2024  196(2)  1064-1079
DWARF AND LESS TILLERS ON CHROMOSOME 3 promotes tillering in rice by sustaining FLORAL ORGAN NUMBER 1 expression.
Liu J., Meng Q., Xiang H., Shi F., Ma L., Li Y., Liu C., Liu Y., Su B.
BMC Genomics 2021  22(1)  800
Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.).
Qin H., Wang J., Chen X., Wang F., Peng P., Zhou Y., Miao Y., Zhang Y., Gao Y., Qi Y., Zhou J., Huang R.
New Phytol. 2019  223(2)  798-813
Rice OsDOF15 contributes to ethylene-inhibited primary root elongation under salt stress.
Zhang Y., Verhoeff N.I., Chen Z., Chen S., Wang M., Zhu Z., Ouwerkerk P.B.
Plant Mol. Biol. 2015  89(3)  229-42
Functions of OsDof25 in regulation of OsC4PPDK.
Lijavetzky D, Carbonero P, Vicente-Carbajosa J.
BMC Evol. Biol. 2003  3  17.
Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families.
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
regulation of transcription, DNA-dependent( GO:0006355 )
regulation of inflorescence meristem growth( GO:0010081 )
cytokinin metabolic process( GO:0009690 )
response to salt stress( GO:0009651 )
root development( GO:0048364 )
positive regulation of cell proliferation( GO:0008284 )
ethylene mediated signaling pathway( GO:0009873 )
regulation of root meristem growth( GO:0010082 )
nucleus( GO:0005634 )
inflorescence development( GO:0010229 )
positive regulation of transcription, DNA-dependent( GO:0045893 )
photoperiodism, flowering( GO:0048573 )
Trait Ontology inflorescence anatomy and morphology trait( TO:0000373 )
cytokinin content( TO:0002660 )
panicle size( TO:0006032 )
inflorescence branching( TO:0000050 )
spikelet number( TO:0000456 )
plant height( TO:0000207 )
panicle length( TO:0000040 )
internode length( TO:0000145 )
secondary branch number( TO:0000557 )
grain yield( TO:0000396 )
root length( TO:0000227 )
salt tolerance( TO:0006001 )
yield trait( TO:0000371 )
1000-dehulled grain weight( TO:0000592 )
grain length( TO:0000734 )
root meristem development( TO:0002692 )
root development trait( TO:0000656 )
ethylene sensitivity( TO:0000173 )
root activity( TO:0000434 )
primary branch number( TO:0000547 )
inflorescence development trait( TO:0000621 )
tiller number( TO:0000346 )
tillering ability( TO:0000329 )
basal internode diameter( TO:0000132 )
flag leaf lamina width( TO:0002758 )
days to heading( TO:0000137 )
flowering time( TO:0002616 )
seed set percent( TO:0000455 )
grain size( TO:0000397 )
Plant Ontology inflorescence( PO:0009049 )
axillary bud( PO:0004709 )
Related Strains
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Phenotype images
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Last updated
Mar 7, 2026

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