Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol YL1
Gene Symbol Synonym MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP
CGSNL Gene Name YELLOW-LEAF 1
Gene Name Synonym Mg-Proto IX monomethylester cyclase, yellow-green leaf 8, Copper Response Defect 1, Yellow-Leaf 1, PHARBITIS NIL LEUCINE ZIPPER
Protein Name PHARBITIS NIL LEUCINE ZIPPER
Allele ygl8, yl-1
Chromosome No. 1
Explanation GO:0036068: light-independent chlorophyll biosynthetic process. GO:1901401: regulation of tetrapyrrole metabolic process. a catalytic subunit of magnesium-protoporphyrin IX monomethyl ester cyclase (MgPME cyclase). TO:0006060: leaf chlorosis.
Trait Class Coloration - Chlorophyll
Tolerance and resistance - Disease resistance
Expression
Sequence/Locus
cDNA Accession No. AK061646
AK059435
AK069333
AK058287
MSU ID LOC_Os01g17170.1
LOC_Os01g17170.2
RAP ID Os01g0279100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Cao W., Zhang H., Zhou Y., Zhao J., Lu S., Wang X., Chen X., Yuan L., Guan H., Wang G., Shen W., De Vleesschauwer D., Li Z., Shi X., Gu J., Guo M., Feng Z., Chen Z., Zhang Y., Pan X., Liu W., Liang G., Yan C., Hu K., Liu Q., Zuo S.
Plant Biotechnol. J. 2022  20(2)  335-349
Suppressing chlorophyll degradation by silencing OsNYC3 improves rice resistance to Rhizoctonia solani, the causal agent of sheath blight.
Zhu X., Mou C., Zhang F., Huang Y., Yang C., Ji J., Liu X., Cao P., Nguyen T., Lan J., Zhou C., Liu S., Jiang L., Wan J.
Rice (N Y) 2020  13(1)  45
WSL9 Encodes an HNH endonuclease domain-containing protein that Is Essential for Early Chloroplast Development in Rice.
Wang H., Shi Y., Zhang X., Xu X., Wu J.L.
Int J Mol Sci 2020  21(4) 
Characterization of a Novel Rice Dynamic Narrow-rolled leaf Mutant with Deficiencies in Aromatic Amino Acids.
Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018  9  782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
Sheng Z., Lv Y., Li W., Luo R., Wei X., Xie L., Jiao G., Shao G., Wang J., Tang S., Hu P.
PLoS ONE 2017  12(5)  e0177989
Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.).
Wang X., Huang R., Quan R.
PLoS ONE 2017  12(1)  e0171118
Mutation in Mg-protoporphyrin IX monomethyl ester cyclase Decreases Photosynthesis Capacity in Rice.
Kong W., Yu X., Chen H., Liu L., Xiao Y., Wang Y., Wang C., Lin Y., Yu Y., Wang C., Jiang L., Zhai H., Zhao Z., Wan J.
Plant Mol. Biol. 2016  92(1-2)  177-91
The catalytic subunit of magnesium-protoporphyrin IX monomethyl ester cyclase forms a chloroplast complex to regulate chlorophyll biosynthesis in rice.
Inagaki N., Kinoshita K., Kagawa T., Tanaka A., Ueno O., Shimada H., Takano M.
PLoS ONE 2015  10(8)  e0135408
Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings.
Maas LF,McClung A,McCouch S
Theor. Appl. Genet. 2010  120(5)  895-908
Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice.
Thomson MJ, Edwards JD, Septiningsih EM, Harrington SE, McCouch SR.
Genetics 2006  172(4)  2501-2514
Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL.
TextPresso Search Search textpresso for YL1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology defense response to fungus( GO:0050832 )
unsaturated fatty acid biosynthetic process( GO:0006636 )
thylakoid membrane organization( GO:0010027 )
rRNA processing( GO:0006364 )
response to light stimulus( GO:0009416 )
photosystem II assembly( GO:0010207 )
oxylipin biosynthetic process( GO:0031408 )
isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway( GO:0019288 )
magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity( GO:0048529 )
chlorophyll biosynthetic process( GO:0015995 )
iron ion binding( GO:0005506 )
DNA binding( GO:0003677 )
chloroplast organization( GO:0009658 )
cysteine biosynthetic process( GO:0019344 )
regulation of lipid metabolic process( GO:0019216 )
chloroplast thylakoid( GO:0009534 )
chloroplast( GO:0009507 )
photosynthesis( GO:0015979 )
chloroplast envelope( GO:0009941 )
plastid membrane organization( GO:0009668 )
Trait Ontology chlorophyll-a content( TO:0000293 )
chlorophyll-b content( TO:0000295 )
chlorophyll ratio( TO:0000298 )
leaf color( TO:0000326 )
chloroplast development trait( TO:0002715 )
photosynthetic ability( TO:0000316 )
sheath blight disease resistance( TO:0000255 )
Plant Ontology stem( PO:0009047 )
leaf( PO:0025034 )
inflorescence( PO:0009049 )
Related Strains
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Phenotype images
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Last updated
Mar 18, 2022


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