Update info.Gene - Detail
Detail of Gene
Click here for feedback| Basic Information | |
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| CGSNL Gene Symbol | LPS1 |
| Gene Symbol Synonym | SDH2, SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14, OsLPS1, OsSDH2-1 |
| CGSNL Gene Name | LATE PREMATURE SENESCENCE 1 |
| Gene Name Synonym | SUCCINATE:UBIQUINONE OXIDOREDUCTASE, mitochondrial succinate dehydrogenase subunit B, ribosomal protein S14, succinate dehydrogenase (iron-sulphur protein subunit), chimeric SDH2-RPS14 |
| Protein Name | SUCCINATE DEHYDROGENASE SUBUNIT 2 |
| Allele | lps1 |
| Chromosome No. | 8 |
| Explanation | Q9S827. AB017427, AB017428, AB017429. D10414. The gene transcripts of sdhB and rps14 result from a single mRNA precursor by alternative splicing (Kubo et al. 1999). |
| Trait Class |
Reproductive organ - Pollination, fertilization, fertility
Coloration - Others Coloration - Chlorophyll Reproductive organ - panicle Vegetative organ - Culm Character as QTL - Yield and productivity Vegetative organ - Leaf Tolerance and resistance - Stress tolerance Biochemical character |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK059815
AK059789 |
| MSU ID |
LOC_Os08g02640.1
LOC_Os08g02640.2 LOC_Os08g02640.3 LOC_Os08g02640.4 LOC_Os08g02640.5 |
| RAP ID |
Os08g0120000 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
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INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Li C., Liu C.Q., Zhang H.S., Chen C.P., Yang X.R., Chen L.F., Liu Q.S., Guo J., Sun C.H., Wang P.R., Deng X.J.
Int J Mol Sci 2020 22(1) <i>lps1</i>, Encoding Iron-Sulfur Subunit SDH2-1 of succinate dehydrogenase, Affects leaf senescence and grain yield in Rice.
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Huang S,Taylor NL,Narsai R,Eubel H,Whelan J,Millar AH
Plant Mol. Biol. 2010 72(3) 331-42 Functional and composition differences between mitochondrial complex II in Arabidopsis and rice are correlated with the complex genetic history of the enzyme.
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Kubo,N., Harada,K., Hirai,A. and Kadowaki,K.
Proc. Natl. Acad. Sci. U.S.A. 1999 96(16) 9207-9211 A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: common use of the same mitochondrial targeting signal for different proteins.
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Umeda,M., Hara,C., Matsubayashi,Y., Li,H.H., Liu,Q., Tadokoro,F., Aotsuka,S. and Uchimiya,H.
Plant Mol. Biol. 1994 25(3) 469-478 Expressed sequence tags from cultured cells of rice (Oryza sativa L.) under stressed conditions: analysis of transcripts of genes engaged in ATP-generating pathways.
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Uchimiya,H., Kidou,S., Shimazaki,T., Aotsuka,S., Takamatsu,S., Nishi,R., Hashimoto,H., Matsubayashi,Y., Kidou,N., Umeda,M. and Kato,A.
Plant J. 1992 2(6) 1005-1009 Random sequencing og cDNA librariesreveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.)
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| TextPresso Search | Search textpresso for LPS1 ( Recent references may be retrievable, but without any warranty ) |
| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
inflorescence development( GO:0010229 )
mitochondrion( GO:0005739 ) mitochondrion organization( GO:0007005 ) chloroplast organization( GO:0009658 ) leaf senescence( GO:0010150 ) 2 iron, 2 sulfur cluster binding( GO:0051537 ) succinate dehydrogenase activity( GO:0000104 ) tricarboxylic acid cycle( GO:0006099 ) electron carrier activity( GO:0009055 ) oxidoreductase activity( GO:0016491 ) |
| Trait Ontology |
leaf senescence( TO:0000249 )
grain yield( TO:0000396 ) photosynthetic rate( TO:0001015 ) chlorophyll-a content( TO:0000293 ) chlorophyll-b content( TO:0000295 ) carotenoid content( TO:0000496 ) chloroplast development trait( TO:0002715 ) panicle size( TO:0006032 ) seed set percent( TO:0000455 ) hydrogen peroxide content( TO:0000605 ) inflorescence development trait( TO:0000621 ) days to heading( TO:0000137 ) plant height( TO:0000207 ) panicle length( TO:0000040 ) filled grain number( TO:0000447 ) photosynthetic ability( TO:0000316 ) stomatal conductance( TO:0000522 ) seed fertility( TO:0000639 ) |
| Plant Ontology |
4 leaf senescence stage( PO:0001054 )
leaf( PO:0025034 ) root tip( PO:0000025 ) plant ovary( PO:0009072 ) anther( PO:0009066 ) inflorescence development stage( PO:0001083 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jun 9, 2021 | |
