Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SH4
Gene Symbol Synonym sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
CGSNL Gene Name SHATTERING 4
Gene Name Synonym grain shattering quantitative trait locus on chromosome 4, SHATTERING ABORTION2, shattering abortion 2, shattering 4, Shattering1, Myb/SANT-LIKE 23
Protein Name
Allele sh4-1, sh4-2, shat2, qSH4-W, sh4
Chromosome No. 4
Explanation EF203243. DQ383398-DQ421814 (Oryza sativa and other wild rice species). GU220907-GU221049 (Oryza sativa and other wild rice species). EU999862-EU999948 (Oryza sativa and other wild rice species). EF203243 (O. rufipogon), EF203244 (indica). trihelix family of transcription factors. SHA1 in Lin et al. 2007. Myb3 family TF gene. OgSh4 in O. glaberrima. a Myb3 transcription factor. AB330247, AB330272-AB330290. (Oryza sativa and other wild rice species). TO:0000930: seed shattering.
Trait Class Seed - Physiological traits - Shattering
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. DQ383374
MSU ID LOC_Os04g57530.1
RAP ID Os04g0670900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Alam O., Purugganan M.D.
Plant Cell 2024   
Domestication and the evolution of crops: variable syndromes, complex genetic architectures, and ecological entanglements.
Mun B.G., Shahid M., Lee G.S., Hussain A., Yun B.W.
Int J Mol Sci 2022  23(21) 
A Novel rhs1 Locus in Rice Attributes Seed-Pod SHATTERING by the Regulation of Endogenous S-Nitrosothiols.
Lu Y., Xu Y., Li N.
Rice (N Y) 2022  15(1)  11
Early Domestication History of Asian Rice Revealed by Mutations and Genome-Wide Analysis of Gene Genealogies.
Li J., Zhang M., Sun J., Mao X., Wang J., Wang J., Liu H., Zheng H., Zhen Z., Zhao H., Zou D.
Int J Mol Sci 2019  20(2) 
Genome-Wide Characterization and Identification of Trihelix Transcription Factor and Expression Profiling in Response to Abiotic Stresses in Rice (<i>Oryza sativa</i> L.).
Wang W., Mauleon R., Hu Z., Chebotarov D., Tai S., Wu Z., Li M., Zheng T., Fuentes R.R., Zhang F., Mansueto L., Copetti D., Sanciangco M., Palis K.C., Xu J., Sun C., Fu B., Zhang H., Gao Y., Zhao X., Shen F., Cui X., Yu H., Li Z., Chen M., Detras J., Zhou Y., Zhang X., Zhao Y., Kudrna D., Wang C., Li R., Jia B., Lu J., He X., Dong Z., Xu J., Li Y., Wang M., Shi J., Li J., Zhang D., Lee S., Hu W., Poliakov A., Dubchak I., Ulat V.J., Borja F.N., Mendoza J.R., Ali J., Li J., Gao Q., Niu Y., Yue Z., Naredo M.E.B., Talag J., Wang X., Li J., Fang X., Yin Y., Glaszmann J.C., Zhang J., Li J., Hamilton R.S., Wing R.A., Ruan J., Zhang G., Wei C., Alexandrov N., McNally K.L., Li Z., Leung H.
Nature 2018  557(7703)  43-49
Genomic variation in 3,010 diverse accessions of Asian cultivated rice.
Civáň P., Brown T.A.
Genet. Resour. Crop Evol. 2017  64(6)  1125-1132
Origin of rice (Oryza sativa L.) domestication genes.
Li L.F., Li Y.L., Jia Y., Caicedo A.L., Olsen K.M.
Nat. Genet. 2017  49(5)  811-814
Signatures of adaptation in the weedy rice genome.
Yoon J., Cho L.H., Kim S.L., Choi H., Koh H.J., An G.
Plant J. 2014  79(5)  717-28
The BEL1-type homeobox gene SH5 induces Seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis.
Purugganan M.D.
Nat. Genet. 2014  46(9)  931-2
An evolutionary genomic tale of two rice species.
Wang M., Yu Y., Haberer G., Marri P.R., Fan C., Goicoechea J.L., Zuccolo A., Song X., Kudrna D., Ammiraju J.S., Cossu R.M., Maldonado C., Chen J., Lee S., Sisneros N., de Baynast K., Golser W., Wissotski M., Kim W., Sanchez P., Ndjiondjop M.N., Sanni K., Long M., Carney J., Panaud O., Wicker T., Machado C.A., Chen M., Mayer K.F., Rounsley S., Wing R.A.
Nat. Genet. 2014  46(9)  982-8
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.
Nakano T., Ito Y.
Plant Biotechnology 2013  30  209-216
Molecular mechanisms controlling plant organ abscission
Ishii T., Numaguchi K., Miura K., Yoshida K., Thanh P.T., Htun T.M., Yamasaki M., Komeda N., Matsumoto T., Terauchi R., Ishikawa R., Ashikari M.
Nat. Genet. 2013  45(4)  462-5, 465e1-2
OsLG1 regulates a closed panicle trait in domesticated rice.
Zhou,Y., Lu,D.F., Li,C.Y., Luo,J.H., Zhu,B., Zhu,J.J., Shangguan,Y.Y., Wang,Z.X., Sang,T., Zhou,B. and Han,B.
Plant Cell 2012  24(3)  1034-1048
Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1
Thurber,C.S., Reagon,M., Gross,B.L., Olsen,K.M., Jia,Y. and Caicedo,A.L.
Mol. Ecol. 2010  19(16)  3271-3284
Molecular evolution of shattering loci in U.S. weedy rice
Zhang,L.B., Zhu,Q., Wu,Z.Q., Ross-Ibarra,J., Gaut,B.S., Ge,S. and Sang,T.
New Phytol. 2009  184(3)  708-720
Selection on grain shattering genes and rates of rice domestication
Zhang,Y., Wang,J., Zhang,X., Chen,J.Q., Tian,D. and Yang,S.
J. Mol. Evol. 2009  68(4)  393-402
Genetic signature of rice domestication shown by a variety of genes
Li,X., Tan,L., Huang,H., Zhu,Z., Li,C., Hu,S. and Sun,C.
Biotechnol. Lett. 2008  30(3)  555-561
Construction of a bacterial artificial chromosome (BAC) library of common wild rice (Oryza rufipogon Griff.) for map-based cloning of genes selected during the domestication of rice
Lin,Z., Griffith,M.E., Li,X., Zhu,Z., Tan,L., Fu,Y., Zhang,W., Wang,X., Xie,D. and Sun,C.
Planta. 2007  226(1)  11-20
Origin of seed shattering in rice (Oryza sativa L.).
Onishi,K., Takagi,K., Kontani,M., Tanaka,T. and Sano,Y.
Genome 2007  50(8)  757-766
Different patterns of genealogical relationships found in the two major QTLs causing reduction of seed shattering during rice domestication
Li C, Zhou A, Sang T.
New Phytol. 2006  170(1)  185-93.
Genetic analysis of rice domestication syndrome with the wild annual species, Oryza nivara.
Li,C., Zhou,A. and Sang,T.
Science 2006  311(5769)  1936-1939
Rice domestication by reducing shattering.
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to nitrosative stress( GO:0051409 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
Trait Ontology grain shattering( TO:0000473 )
Plant Ontology stem( PO:0009047 )
leaf( PO:0025034 )
Related Strains
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Phenotype images
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Last updated
Mar 20, 2026

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