Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | SH-H |
| Gene Symbol Synonym | sh-h, OsSH-H, OsCPL1, CPL1 |
| CGSNL Gene Name | SHATTERING-H |
| Gene Name Synonym | carboxy-terminal domain phosphatase-like 1 |
| Protein Name | CARBOXY-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 PROTEIN. |
| Allele | sh-h |
| Chromosome No. | 7 |
| Explanation | sh-h is very close to the Rc gene. between RM7161 and RM8262 on chromosome 7. SH-H encodes a carboxy-terminal domain (CTD) phosphatase-like 1 (OsCPL1) protein that is similar to the metazoan CTD phosphatases, which are involved in cell differentiation. GQ328745. TO:0000930: seed shattering. |
| Trait Class |
Seed - Physiological traits - Shattering
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| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK109769
|
| MSU ID |
LOC_Os07g10690.1
LOC_Os07g10690.2 LOC_Os07g10690.3 LOC_Os07g10690.4 LOC_Os07g10690.6 LOC_Os07g10690.7 LOC_Os07g10690.8 |
| RAP ID |
Os07g0207700 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
- |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
|
Mun B.G., Shahid M., Lee G.S., Hussain A., Yun B.W.
Int J Mol Sci 2022 23(21) A Novel rhs1 Locus in Rice Attributes Seed-Pod SHATTERING by the Regulation of Endogenous S-Nitrosothiols.
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Ji H,Kim SR,Kim YH,Kim H,Eun MY,Jin ID,Cha YS,Yun DW,Ahn BO,Lee MC,Lee GS,Yoon UH,Lee JS,Lee YH,Suh SC,Jiang W,Yang JI,Jin P,McCouch SR,An G,Koh HJ
Plant J. 2010 61(1) 96-106 Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice.
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Ji HS,Chu SH,Jiang W,Cho YI,Hahn JH,Eun MY,McCouch SR,Koh HJ
Genetics 2006 173 995-1005 Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
nucleus( GO:0005634 )
phosphoprotein phosphatase activity( GO:0004721 ) membrane( GO:0016020 ) |
| Trait Ontology |
grain shattering( TO:0000473 )
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| Plant Ontology | - |
| Related Strains | |
| - | |
| Phenotype images | |
| - | |
| Last updated | |
| Feb 13, 2023 | |
