Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol FC1
Gene Symbol Synonym OsCAD7, fc1, CAD7
Gene Name Synonym flexible culm1, FLEXIBLE CULM1, Protein FLEXIBLE CULM 1, Cinnamyl alcohol dehydrogenase 7
Allele fc
Chromosome No. 4
Explanation fc1 plants exhibited a reduction in mechanical strength and a slight delay in growth. Q0JA75. GO:0052747:sinapyl alcohol dehydrogenase activity. GO:1901698: response to nitrogen compound. PO:0030123: panicle inflorescence.
Trait Class Biochemical character
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK102452
MSU ID LOC_Os04g52280.1
RAP ID Os04g0612700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Dong N.Q., Sun Y., Guo T., Shi C.L., Zhang Y.M., Kan Y., Xiang Y.H., Zhang H., Yang Y.B., Li Y.C., Zhao H.Y., Yu H.X., Lu Z.Q., Wang Y., Ye W.W., Shan J.X., Lin H.X.
Nat Commun 2020  11(1)  2629
UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice.
Bang S.W., Lee D.K., Jung H., Chung P.J., Kim Y.S., Choi Y.D., Suh J.W., Kim J.K.
Plant Biotechnol. J. 2018   
Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.
Park H.L., Kim T.L., Bhoo S.H., Lee T.H., Lee S.W., Cho M.H.
Molecules 2018  23(10) 
Biochemical Characterization of the Rice Cinnamyl Alcohol Dehydrogenase Gene Family.
Zhang W., Wu L., Ding Y., Yao X., Wu X., Weng F., Li G., Liu Z., Tang S., Ding C., Wang S.
J. Plant Res. 2017   
Nitrogen fertilizer application affects lodging resistance by altering secondary cell wall synthesis in japonica rice (Oryza sativa).
Lee D.K., Jung H., Jang G., Jeong J.S., Kim Y.S., Ha S.H., Do Choi Y., Kim J.K.
Plant Physiol. 2016  172(1)  575-88
Overexpression of the OsERF71 Transcription Factor Alters Rice Root Structure and Drought Resistance.
Hirano K., Aya K., Kondo M., Okuno A., Morinaka Y., Matsuoka M.
Plant Cell Rep. 2012  31(1)  91-101
OsCAD2 is the major CAD gene responsible for monolignol biosynthesis in rice culm.
Li X,Yang Y,Yao J,Chen G,Li X,Zhang Q,Wu C
Plant Mol. Biol. 2009  69  685-97
FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice.
Tobias,C.M. and Chow,E.K.
Planta. 2005  220 (5)  678-688
Structure of the cinnamyl-alcohol dehydrogenase gene family in rice and promoter activity of a member associated with lignification
TextPresso Search Search textpresso for FC1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology cinnamyl-alcohol dehydrogenase activity( GO:0045551 )
lignin metabolic process( GO:0009808 )
cell wall macromolecule metabolic process( GO:0044036 )
zinc ion binding( GO:0008270 )
lignin biosynthetic process( GO:0009809 )
nucleotide binding( GO:0000166 )
response to bacterium( GO:0009617 )
plant-type hypersensitive response( GO:0009626 )
apoplast( GO:0048046 )
aryl-alcohol dehydrogenase activity( GO:0018456 )
oxidation reduction( GO:0055114 )
secondary cell wall biogenesis( GO:0009834 )
Trait Ontology lignin biosynthesis trait( TO:0000733 )
nitrogen sensitivity( TO:0000011 )
stem strength( TO:0000051 )
Plant Ontology stem( PO:0009047 )
leaf sheath( PO:0020104 )
Related Strains
Phenotype images
Last updated
Aug 28, 2020