Gene - Detail
Detail of Gene
Basic Information | |
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CGSNL Gene Symbol | PLDvarphi |
Gene Symbol Synonym | OsPLDvarphi, spPLD, OsspPLD |
CGSNL Gene Name | PHOSPHOLIPASE D varphi |
Gene Name Synonym | |
Protein Name | PHOSPHOLIPASE D varphi |
Allele | |
Chromosome No. | 6 |
Explanation | a secretory PLD. GO:2000028: regulation of photoperiodism, flowering. PO:0030123: panicle inflorescence. |
Trait Class |
Biochemical character
Reproductive organ - Heading date |
Expression | |
Sequence/Locus | |
cDNA Accession No. |
AK122015
|
MSU ID |
LOC_Os06g44060.1
LOC_Os06g44060.2 |
RAP ID |
Os06g0649900 |
Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
INSD Accession List (Test version) |
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Map | |
Locate(cM) | |
Link map | Classical linkage map |
References | |
Qu L., Chu Y.J., Lin W.H., Xue H.W.
PLoS Genet. 2021 17(12) e1009905 A secretory Phospholipase D hydrolyzes phosphatidylcholine to suppress rice heading time.
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Li G, Lin F, Xue HW.
Cell Res 2007 17(10) 881-94. Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination.
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TextPresso Search | Search textpresso for PLDvarphi ( Recent references may be retrievable, but without any warranty ) |
DB Reference | |
Gramene ID | - |
Ontologies | |
Gene Ontology |
negative regulation of short-day photoperiodism, flowering( GO:0048577 )
negative regulation of long-day photoperiodism, flowering( GO:0048579 ) phosphatidylcholine catabolic process( GO:0034638 ) extracellular space( GO:0005615 ) photoperiodism, flowering( GO:0048573 ) phospholipase D activity( GO:0004630 ) |
Trait Ontology |
days to heading( TO:0000137 )
flowering time( TO:0002616 ) |
Plant Ontology |
root( PO:0009005 )
inflorescence( PO:0009049 ) |
Related Strains | |
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Phenotype images | |
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Last updated | |
May 30, 2022 |