Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PLDvarphi
Gene Symbol Synonym OsPLDvarphi, spPLD, OsspPLD
CGSNL Gene Name PHOSPHOLIPASE D varphi
Gene Name Synonym
Protein Name PHOSPHOLIPASE D varphi
Allele
Chromosome No. 6
Explanation a secretory PLD. GO:2000028: regulation of photoperiodism, flowering. PO:0030123: panicle inflorescence.
Trait Class Biochemical character
Reproductive organ - Heading date
Expression
Sequence/Locus
cDNA Accession No. AK122015
MSU ID LOC_Os06g44060.1
LOC_Os06g44060.2
RAP ID Os06g0649900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Qu L., Chu Y.J., Lin W.H., Xue H.W.
PLoS Genet. 2021  17(12)  e1009905
A secretory Phospholipase D hydrolyzes phosphatidylcholine to suppress rice heading time.
Li G, Lin F, Xue HW.
Cell Res 2007  17(10)  881-94.
Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination.
TextPresso Search Search textpresso for PLDvarphi ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology negative regulation of short-day photoperiodism, flowering( GO:0048577 )
negative regulation of long-day photoperiodism, flowering( GO:0048579 )
phosphatidylcholine catabolic process( GO:0034638 )
extracellular space( GO:0005615 )
photoperiodism, flowering( GO:0048573 )
phospholipase D activity( GO:0004630 )
Trait Ontology days to heading( TO:0000137 )
flowering time( TO:0002616 )
Plant Ontology root( PO:0009005 )
inflorescence( PO:0009049 )
Related Strains
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Phenotype images
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Last updated
May 30, 2022


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