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Basic Information
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CGSNL Gene Symbol
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NYC3
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Gene Symbol Synonym
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nyc3, OsNYC3, PPH
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CGSNL Gene Name
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NON-YELLOW COLORING 3
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Gene Name Synonym
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pheophytinase
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Protein Name
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PLASTID-LOCALIZING ALPHA/BETA HYDROLASE-FOLD FAMILY PROTEIN
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Allele
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nyc3-1, nyc3-2, nyc3-3
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Chromosome No.
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6
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Explanation
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AB476298. stay green.
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Trait Class
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Vegetative organ - Leaf
Tolerance and resistance - Disease resistance
Coloration - Chlorophyll
Character as QTL - Yield and productivity
Biochemical character
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK066777
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MSU ID
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LOC_Os06g24730.1
LOC_Os06g24730.2
LOC_Os06g24730.3
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RAP ID
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Os06g0354700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Sun L., Xu H., Song J., Yang X., Wang X., Liu H., Pang M., Hu Y., Yang Q., Ning X., Liang S., Zhang S., Luan W.
Rice (N Y) 2024 17(1) 15
OsNAC103, a NAC Transcription Factor, Positively Regulates leaf senescence and Plant Architecture in Rice.
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Xu H., Chang Q., Huang L., Wei P., Song Y., Guo Z., Peng Y.L., Fan J.
Int J Mol Sci 2023 24(8)
An <i>Agrobacterium</i>-Mediated Transient Expression Method for Functional Assay of Genes Promoting Disease in Monocots.
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Zang Y., Yao Y., Xu Z., Wang B., Mao Y., Wang W., Zhang W., Zhang H., Liu L., Wang Z., Liang G., Yang J., Zhou Y., Gu J.
Int J Mol Sci 2022 23(22)
The Relationships among "STAY-GREEN" Trait, Post-Anthesis Assimilate Remobilization, and Grain Yield in Rice (<i>Oryza sativa</i> L.).
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Gao Y., Xiang X., Zhang Y., Cao Y., Wang B., Zhang Y., Wang C., Jiang M., Duan W., Chen D., Zhan X., Cheng S., Liu Q., Cao L.
Int J Mol Sci 2022 23(2)
Disruption of <i>OsPHD1</i>, Encoding a UDP-glucose epimerase, Causes JA Accumulation and Enhanced Bacterial Blight Resistance in Rice.
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Cao W., Zhang H., Zhou Y., Zhao J., Lu S., Wang X., Chen X., Yuan L., Guan H., Wang G., Shen W., De Vleesschauwer D., Li Z., Shi X., Gu J., Guo M., Feng Z., Chen Z., Zhang Y., Pan X., Liu W., Liang G., Yan C., Hu K., Liu Q., Zuo S.
Plant Biotechnol. J. 2022 20(2) 335-349
Suppressing chlorophyll degradation by silencing OsNYC3 improves rice resistance to Rhizoctonia solani, the causal agent of sheath blight.
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Zhang Z., He Y., Li L., Zhang X., Xu X., Shi Y., Wu J.L.
Plant Signal Behav 2021 16(3) 1864606
Characterization of a novel allele encoding pheophorbide a oxygenase in rice.
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Xue J., Lu D., Wang S., Lu Z., Liu W., Wang X., Fang Z., He X.
Sci Rep 2021 11(1) 14083
Integrated transcriptomic and metabolomic analysis provides insight into the regulation of leaf senescence in rice.
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Lim C., Kang K., Shim Y., Sakuraba Y., An G., Paek N.C.
Front Plant Sci 2020 11 1096
Rice ETHYLENE RESPONSE FACTOR 101 Promotes leaf senescence Through Jasmonic Acid-Mediated Regulation of <i>OsNAP</i> and <i>OsMYC2</i>.
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Zhou D., Li T., Yang Y., Qu Z., Ouyang L., Jiang Z., Lin X., Zhu C., Peng L., Fu J., Peng X., Bian J., Tang W., Xu J., He H.
Front Plant Sci 2020 11 782
<i>OsPLS4</i> Is Involved in Cuticular Wax Biosynthesis and Affects leaf senescence in Rice.
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Kim T., Kang K., Kim S.H., An G., Paek N.C.
Int J Mol Sci 2019 20(18)
OsWRKY5 Promotes Rice leaf senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
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Wang M., Zhang T., Peng H., Luo S., Tan J., Jiang K., Heng Y., Zhang X., Guo X., Zheng J., Cheng Z.
Front Plant Sci 2018 9 560
Rice <i>Premature leaf senescence 2</i>, Encoding a Glycosyltransferase (GT), Is Involved in leaf senescence.
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Zeng D.D., Yang C.C., Qin R., Alamin M., Yue E.K., Jin X.L., Shi C.H.
Plant Cell Rep. 2018 37(6) 933-946
A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).
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Piao W., Han S.H., Sakuraba Y., Paek N.C.
Mol. Cells 2017 40(10) 773-786
Rice 7-Hydroxymethyl Chlorophyll a Reductase Is Involved in the Promotion of Chlorophyll Degradation and Modulates Cell Death Signaling.
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Mao C., Lu S., Lv B., Zhang B., Shen J., He J., Luo L., Xi D., Chen X., Ming F.
Plant Physiol. 2017 174(3) 1747-1763
A Rice NAC Transcription Factor Promotes leaf senescence via ABA Biosynthesis.
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Lu G., Casaretto J.A., Ying S., Mahmood K., Liu F., Bi Y.M., Rothstein S.J.
Plant Mol. Biol. 2017
Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.
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Liu J., Shen J., Xu Y., Li X., Xiao J., Xiong L.
J. Exp. Bot. 2016 67(19) 5785-5798
Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.
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Yang Y., Xu J., Huang L., Leng Y., Dai L., Rao Y., Chen L., Wang Y., Tu Z., Hu J., Ren D., Zhang G., Zhu L., Guo L., Qian Q., Zeng D.
J. Exp. Bot. 2015
PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.
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Liang C., Wang Y., Zhu Y., Tang J., Hu B., Liu L., Ou S., Wu H., Sun X., Chu J., Chu C.
Proc. Natl. Acad. Sci. U.S.A. 2014 111(27) 10013-8
OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice.
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Morita R,Sato Y,Masuda Y,Nishimura M,Kusaba M
Plant J. 2009 59 940-952
Defect in non-yellow coloring 3, an alpha/beta hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice.
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Li G, Lin F, Xue HW.
Cell Res 2007 17(10) 881-94.
Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to low light intensity stimulus( GO:0009645 )
regulation of cell death( GO:0010941 )
defense response to fungus( GO:0050832 )
plastid( GO:0009536 )
pheophytinase activity( GO:0080124 )
leaf senescence( GO:0010150 )
chlorophyll catabolic process( GO:0015996 )
hydrolase activity( GO:0016787 )
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Trait Ontology
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leaf color( TO:0000326 )
leaf senescence( TO:0000249 )
sheath blight disease resistance( TO:0000255 )
plant height( TO:0000207 )
hydrogen peroxide content( TO:0000605 )
chlorophyll content( TO:0000495 )
light intensity sensitivity( TO:0000460 )
grain yield( TO:0000396 )
1000-seed weight( TO:0000382 )
filled grain number( TO:0000447 )
sugar content( TO:0000333 )
starch content( TO:0000696 )
carbohydrate content( TO:0000291 )
total soluble sugar content( TO:0000340 )
grain weight( TO:0000590 )
blast disease( TO:0000074 )
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Plant Ontology
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4 leaf senescence stage( PO:0001054 )
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Related Strains
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Induced Mutation Lines(National Inst. of Genetics)
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2
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Phenotype images
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-
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Last updated
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Jun 25, 2024
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Update info.