Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol NYC3
Gene Symbol Synonym nyc3, OsNYC3, PPH
Gene Name Synonym pheophytinase
Allele nyc3-1, nyc3-2, nyc3-3
Chromosome No. 6
Explanation AB476298. stay green.
Trait Class Vegetative organ - Leaf
Tolerance and resistance - Disease resistance
Coloration - Chlorophyll
Character as QTL - Yield and productivity
Biochemical character
cDNA Accession No. AK066777
MSU ID LOC_Os06g24730.1
RAP ID Os06g0354700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Xu H., Chang Q., Huang L., Wei P., Song Y., Guo Z., Peng Y.L., Fan J.
Int J Mol Sci 2023  24(8) 
An <i>Agrobacterium</i>-Mediated Transient Expression Method for Functional Assay of Genes Promoting Disease in Monocots.
Zang Y., Yao Y., Xu Z., Wang B., Mao Y., Wang W., Zhang W., Zhang H., Liu L., Wang Z., Liang G., Yang J., Zhou Y., Gu J.
Int J Mol Sci 2022  23(22) 
The Relationships among "STAY-GREEN" Trait, Post-Anthesis Assimilate Remobilization, and Grain Yield in Rice (<i>Oryza sativa</i> L.).
Gao Y., Xiang X., Zhang Y., Cao Y., Wang B., Zhang Y., Wang C., Jiang M., Duan W., Chen D., Zhan X., Cheng S., Liu Q., Cao L.
Int J Mol Sci 2022  23(2) 
Disruption of <i>OsPHD1</i>, Encoding a UDP-glucose epimerase, Causes JA Accumulation and Enhanced Bacterial Blight Resistance in Rice.
Cao W., Zhang H., Zhou Y., Zhao J., Lu S., Wang X., Chen X., Yuan L., Guan H., Wang G., Shen W., De Vleesschauwer D., Li Z., Shi X., Gu J., Guo M., Feng Z., Chen Z., Zhang Y., Pan X., Liu W., Liang G., Yan C., Hu K., Liu Q., Zuo S.
Plant Biotechnol. J. 2022  20(2)  335-349
Suppressing chlorophyll degradation by silencing OsNYC3 improves rice resistance to Rhizoctonia solani, the causal agent of sheath blight.
Xue J., Lu D., Wang S., Lu Z., Liu W., Wang X., Fang Z., He X.
Sci Rep 2021  11(1)  14083
Integrated transcriptomic and metabolomic analysis provides insight into the regulation of leaf senescence in rice.
Zhang Z., He Y., Li L., Zhang X., Xu X., Shi Y., Wu J.L.
Plant Signal Behav 2021  16(3)  1864606
Characterization of a novel allele encoding pheophorbide a oxygenase in rice.
Zhou D., Li T., Yang Y., Qu Z., Ouyang L., Jiang Z., Lin X., Zhu C., Peng L., Fu J., Peng X., Bian J., Tang W., Xu J., He H.
Front Plant Sci 2020  11  782
<i>OsPLS4</i> Is Involved in Cuticular Wax Biosynthesis and Affects leaf senescence in Rice.
Lim C., Kang K., Shim Y., Sakuraba Y., An G., Paek N.C.
Front Plant Sci 2020  11  1096
Rice ETHYLENE RESPONSE FACTOR 101 Promotes leaf senescence Through Jasmonic Acid-Mediated Regulation of <i>OsNAP</i> and <i>OsMYC2</i>.
Kim T., Kang K., Kim S.H., An G., Paek N.C.
Int J Mol Sci 2019  20(18) 
OsWRKY5 Promotes Rice leaf senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.
Wang M., Zhang T., Peng H., Luo S., Tan J., Jiang K., Heng Y., Zhang X., Guo X., Zheng J., Cheng Z.
Front Plant Sci 2018  9  560
Rice <i>Premature leaf senescence 2</i>, Encoding a Glycosyltransferase (GT), Is Involved in leaf senescence.
Zeng D.D., Yang C.C., Qin R., Alamin M., Yue E.K., Jin X.L., Shi C.H.
Plant Cell Rep. 2018  37(6)  933-946
A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).
Piao W., Han S.H., Sakuraba Y., Paek N.C.
Mol. Cells 2017  40(10)  773-786
Rice 7-Hydroxymethyl Chlorophyll a Reductase Is Involved in the Promotion of Chlorophyll Degradation and Modulates Cell Death Signaling.
Mao C., Lu S., Lv B., Zhang B., Shen J., He J., Luo L., Xi D., Chen X., Ming F.
Plant Physiol. 2017  174(3)  1747-1763
A Rice NAC Transcription Factor Promotes leaf senescence via ABA Biosynthesis.
Lu G., Casaretto J.A., Ying S., Mahmood K., Liu F., Bi Y.M., Rothstein S.J.
Plant Mol. Biol. 2017   
Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.
Liu J., Shen J., Xu Y., Li X., Xiao J., Xiong L.
J. Exp. Bot. 2016  67(19)  5785-5798
Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.
Yang Y., Xu J., Huang L., Leng Y., Dai L., Rao Y., Chen L., Wang Y., Tu Z., Hu J., Ren D., Zhang G., Zhu L., Guo L., Qian Q., Zeng D.
J. Exp. Bot. 2015   
PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.
Liang C., Wang Y., Zhu Y., Tang J., Hu B., Liu L., Ou S., Wu H., Sun X., Chu J., Chu C.
Proc. Natl. Acad. Sci. U.S.A. 2014  111(27)  10013-8
OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice.
Morita R,Sato Y,Masuda Y,Nishimura M,Kusaba M
Plant J. 2009  59  940-952
Defect in non-yellow coloring 3, an alpha/beta hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice.
Li G, Lin F, Xue HW.
Cell Res 2007  17(10)  881-94.
Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination.
TextPresso Search Search textpresso for NYC3 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to low light intensity stimulus( GO:0009645 )
regulation of cell death( GO:0010941 )
defense response to fungus( GO:0050832 )
plastid( GO:0009536 )
pheophytinase activity( GO:0080124 )
leaf senescence( GO:0010150 )
chlorophyll catabolic process( GO:0015996 )
hydrolase activity( GO:0016787 )
Trait Ontology leaf color( TO:0000326 )
leaf senescence( TO:0000249 )
sheath blight disease resistance( TO:0000255 )
plant height( TO:0000207 )
hydrogen peroxide content( TO:0000605 )
chlorophyll content( TO:0000495 )
light intensity sensitivity( TO:0000460 )
grain yield( TO:0000396 )
1000-seed weight( TO:0000382 )
filled grain number( TO:0000447 )
sugar content( TO:0000333 )
starch content( TO:0000696 )
carbohydrate content( TO:0000291 )
total soluble sugar content( TO:0000340 )
grain weight( TO:0000590 )
blast disease( TO:0000074 )
Plant Ontology 4 leaf senescence stage( PO:0001054 )
Related Strains
Phenotype images
Last updated
Aug 29, 2023