Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SNK2
Gene Symbol Synonym SK2, OsSK2, OsSNK2
CGSNL Gene Name SNORKEL 2
Gene Name Synonym SNORKEL2
Protein Name ETHYLENE RESPONSE FACTOR
Allele
Chromosome No. 12
Explanation Major QTL regulates deepwater response. AB510479 (O. sativa Indica, C9285), AB510481 (O. sativa Indica, Bhadua), AB510483 (O. rufipogon, W0120), AB510485 (O. nivara, W0106), AB510486 ( O. glumipatula, IRGC105668), AB510487 (O. glumipatula, IRGC105668). absent in normal cultivars [O. sativa ssp. japonica Taichung 65 (T65) and Nipponbare (O. sativa ssp. japonica)]. SNORKEL2 was present in both Ob and Og (Shang et al. 2022). a group VII ethylene response factor (ERFVII).
Trait Class Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Character as QTL
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID -
RAP ID -
Links -
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Loreti E., Perata P.
Front Genet 2023  14  1213839
ERFVII transcription factors and their role in the adaptation to hypoxia in Arabidopsis and crops.
Nagai K., Kurokawa Y., Mori Y., Minami A., Reuscher S., Wu J., Matsumoto T., Ashikari M.
Plants (Basel) 2022  11(3) 
<i>SNORKEL</i> Genes Relating to Flood Tolerance Were Pseudogenized in Normal Cultivated Rice.
Shang L., Li X., He H., Yuan Q., Song Y., Wei Z., Lin H., Hu M., Zhao F., Zhang C., Li Y., Gao H., Wang T., Liu X., Zhang H., Zhang Y., Cao S., Yu X., Zhang B., Zhang Y., Tan Y., Qin M., Ai C., Yang Y., Zhang B., Hu Z., Wang H., Lv Y., Wang Y., Ma J., Wang Q., Lu H., Wu Z., Liu S., Sun Z., Zhang H., Guo L., Li Z., Zhou Y., Li J., Zhu Z., Xiong G., Ruan J., Qian Q.
Cell Res. 2022  32(10)  878-896
A super pan-genomic landscape of rice.
Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.
Nat. Genet. 2018  50(2)  278-284
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.
Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H, Matsuoka M, Mori H, Ashikari M.
Nature 2009  460(7258)  1026-30
The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water.
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to hypoxia( GO:0001666 )
response to flooding( GO:0009413 )
internode patterning( GO:0080006 )
response to deep water( GO:0030912 )
DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription, DNA-dependent( GO:0006351 )
Trait Ontology deepwater stress( TO:0000103 )
internode length( TO:0000145 )
submergence tolerance( TO:0000524 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Dec 1, 2023

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