Update info.Gene - Detail
Detail of Gene
Click here for feedback| Basic Information | |
|---|---|
| CGSNL Gene Symbol | C3H41 |
| Gene Symbol Synonym | OsC3H41, MKRN, OsRING387, RING387, OsCPSF30-L3, CPSF30-L3 |
| CGSNL Gene Name | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 41 |
| Gene Name Synonym | E3 ubiquitin-protein ligase makorin, Zinc finger CCCH domain-containing protein 41, RING-type E3 ubiquitin ligase 387, 30 kDa subunit of cleavage and polyadenylation specificity factor longer isoform 3, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30 longer isoform 3 |
| Protein Name | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 41 |
| Allele | |
| Chromosome No. | 6 |
| Explanation | EC=6.3.2.- Q5ZA07. OsRFP (RING finger protein). N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:0061630: ubiquitin protein ligase activity. |
| Trait Class |
Tolerance and resistance - Disease resistance
Other Tolerance and resistance - Stress tolerance |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK120250
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| MSU ID |
LOC_Os06g21390.1
LOC_Os06g21390.2 LOC_Os06g21390.3 LOC_Os06g21390.4 |
| RAP ID |
Os06g0318700 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Hasan M., Nishat Z.S., Hasan M.S., Hossain T., Ghosh A.
Biochem Biophys Rep 2024 38 101677 Identification of m6A RNA methylation genes in <i>Oryza sativa</i> and expression profiling in response to different developmental and environmental stimuli.
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Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022 23(1) 154 An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
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Hwang S.G., Park H.M., Han A.R., Jang C.S.
J. Plant Physiol. 2016 191 140-8 Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression.
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Wang D,Guo Y,Wu C,Yang G,Li Y,Zheng C
BMC Genomics. 2008 9 44 Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
protein ubiquitination( GO:0016567 )
protein polyubiquitination( GO:0000209 ) metal ion binding( GO:0046872 ) response to wounding( GO:0009611 ) response to water deprivation( GO:0009414 ) response to desiccation( GO:0009269 ) response to salt stress( GO:0009651 ) response to cold( GO:0009409 ) defense response to fungus( GO:0050832 ) defense response to bacterium( GO:0042742 ) DNA binding( GO:0003677 ) protein binding( GO:0005515 ) zinc ion binding( GO:0008270 ) ligase activity( GO:0016874 ) modification-dependent protein catabolic process( GO:0019941 ) response to arsenic( GO:0046685 ) |
| Trait Ontology |
bacterial blight disease resistance( TO:0000175 )
blast disease( TO:0000074 ) fungal disease resistance( TO:0000439 ) bacterial disease resistance( TO:0000315 ) cold tolerance( TO:0000303 ) salt tolerance( TO:0006001 ) drought tolerance( TO:0000276 ) |
| Plant Ontology | - |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Sep 4, 2024 | |
