Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol C3H41
Gene Symbol Synonym OsC3H41, MKRN, OsRING387, RING387, OsCPSF30-L3, CPSF30-L3
CGSNL Gene Name ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 41
Gene Name Synonym E3 ubiquitin-protein ligase makorin, Zinc finger CCCH domain-containing protein 41, RING-type E3 ubiquitin ligase 387, 30 kDa subunit of cleavage and polyadenylation specificity factor longer isoform 3, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30 longer isoform 3
Protein Name ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 41
Allele
Chromosome No. 6
Explanation EC=6.3.2.- Q5ZA07. OsRFP (RING finger protein). N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:0061630: ubiquitin protein ligase activity.
Trait Class Tolerance and resistance - Disease resistance
Other
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK120250
MSU ID LOC_Os06g21390.1
LOC_Os06g21390.2
LOC_Os06g21390.3
LOC_Os06g21390.4
RAP ID Os06g0318700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Hasan M., Nishat Z.S., Hasan M.S., Hossain T., Ghosh A.
Biochem Biophys Rep 2024  38  101677
Identification of m6A RNA methylation genes in <i>Oryza sativa</i> and expression profiling in response to different developmental and environmental stimuli.
Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022  23(1)  154
An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
Hwang S.G., Park H.M., Han A.R., Jang C.S.
J. Plant Physiol. 2016  191  140-8
Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression.
Wang D,Guo Y,Wu C,Yang G,Li Y,Zheng C
BMC Genomics. 2008  9  44
Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology protein ubiquitination( GO:0016567 )
protein polyubiquitination( GO:0000209 )
metal ion binding( GO:0046872 )
response to wounding( GO:0009611 )
response to water deprivation( GO:0009414 )
response to desiccation( GO:0009269 )
response to salt stress( GO:0009651 )
response to cold( GO:0009409 )
defense response to fungus( GO:0050832 )
defense response to bacterium( GO:0042742 )
DNA binding( GO:0003677 )
protein binding( GO:0005515 )
zinc ion binding( GO:0008270 )
ligase activity( GO:0016874 )
modification-dependent protein catabolic process( GO:0019941 )
response to arsenic( GO:0046685 )
Trait Ontology bacterial blight disease resistance( TO:0000175 )
blast disease( TO:0000074 )
fungal disease resistance( TO:0000439 )
bacterial disease resistance( TO:0000315 )
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 )
drought tolerance( TO:0000276 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Sep 4, 2024


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