Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol HSFC2A
Gene Symbol Synonym HSfC2a, OsHsfC2a, OsHsf-05, HSF05, OsHSF5, HSF5
CGSNL Gene Name HEAT STRESS TRANSCRIPTION FACTOR C2A
Gene Name Synonym Heat stress transcription factor C2a, Heat stress transcription factor C-2a, Heat stress transcription factor 5
Protein Name HEAT STRESS TRANSCRIPTION FACTOR C2a
Allele
Chromosome No. 2
Explanation AP004070. Q6EUG4. OsHSF5 in Muthuramalingam et al. 2019.
Trait Class Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK106488
MSU ID LOC_Os02g13800.1
RAP ID Os02g0232000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Mohanty B.
Front Genet 2021  12  639654
Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
Muthuramalingam P., Jeyasri R., Bharathi RKAS., Suba V., Pandian S.T.K., Ramesh M.
Genomics 2019   
Global integrated omics expression analyses of abiotic stress signaling HSF transcription factor genes in Oryza sativa L.: An in silico approach.
Lavania D., Dhingra A., Grover A.
Planta 2018  247(6)  1267-1276
Analysis of transactivation potential of rice (Oryza sativa L.) heat shock factors.
Mittal D., Enoki Y., Lavania D., Singh A., Sakurai H., Grover A.
FEBS J. 2011  278(17)  3076-85
Binding affinities and interactions among different heat shock element types and heat shock factors in rice (Oryza sativa L.).
Chauhan H., Khurana N., Agarwal P., Khurana P.
Mol. Genet. Genomics 2011  286(2)  171-87
Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
Wang C,Zhang Q,Shou HX
J Zhejiang Univ Sci B 2009  10  291-300
Identification and expression analysis of OsHsfs in rice.
TextPresso Search Search textpresso for HSFC2A ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to deep water( GO:0030912 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
response to stress( GO:0006950 )
sequence-specific DNA binding( GO:0043565 )
response to abiotic stimulus( GO:0009628 )
Trait Ontology abiotic stress trait( TO:0000168 )
submergence tolerance( TO:0000524 )
Plant Ontology leaf sheath( PO:0020104 )
leaf( PO:0025034 )
root( PO:0009005 )
inflorescence( PO:0009049 )
plant ovary( PO:0009072 )
plant embryo( PO:0009009 )
endosperm( PO:0009089 )
Related Strains
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Phenotype images
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Last updated
Jul 8, 2021


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