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Basic Information
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CGSNL Gene Symbol
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MIR159A
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Gene Symbol Synonym
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miR159a, osa-miR159a, osa-MIR159a, OsmiR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2
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CGSNL Gene Name
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MICRORNA159A
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Gene Name Synonym
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Protein Name
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Allele
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Chromosome No.
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1
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Explanation
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miRBASE accession: MI0001092. predicted targets: Os03g0113500(a GT-2 like transcription factor), Os10g0516500 , confirmed target: Os10g0495200. AY551215. LM379305, LM381143.
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Trait Class
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Vegetative organ - Culm
Reproductive organ - Pollination, fertilization, fertility
Seed - Morphological traits
Seed - Physiological traits - Storage substances
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Reproductive organ - Spikelet, flower, glume, awn
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK100209
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MSU ID
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LOC_Os01g32259.1
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RAP ID
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Os01g0507000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Shen Y., Yang G., Miao X., Shi Z.
Rice (N Y) 2023 16(1) 30
OsmiR159 Modulate BPH Resistance Through Regulating G-Protein γ Subunit GS3 Gene in Rice.
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Zhao W., Xiao W., Sun J., Chen M., Ma M., Cao Y., Cen W., Li R., Luo J.
Plants (Basel) 2022 11(7)
An Integration of MicroRNA and Transcriptome Sequencing Analysis Reveal Regulatory Roles of miRNAs in Response to Chilling Stress in Wild Rice.
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Chen J.F., Zhao Z.X., Li Y., Li T.T., Zhu Y., Yang X.M., Zhou S.X., Wang H., Zhao J.Q., Pu M., Feng H., Fan J., Zhang J.W., Huang Y.Y., Wang W.M.
Rice (N Y) 2021 14(1) 26
Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development.
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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Lacombe S,Nagasaki H,Santi C,Duval D,Piegu B,Bangratz M,Breitler JC,Guiderdoni E,Brugidou C,Hirsch J,Cao X,Brice C,Panaud O,Karlowski WM,Sato Y,Echeverria M
BMC Plant Biol 2008 8 123
Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice.
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Luo YC,Zhou H,Li Y,Chen JY,Yang JH,Chen YQ,Qu LH
FEBS Lett. 2006 580 5111-6
Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development.
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Li,Y., Li,W. and Jin,Y.X.
Acta Biochim. Biophys. Sin. (Shanghai) 2005 37 (2) 75-87
Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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micro-ribonucleoprotein complex( GO:0035068 )
RNA-induced silencing complex( GO:0016442 )
mRNA cleavage( GO:0006379 )
gene silencing by miRNA( GO:0035195 )
stamen development( GO:0048443 )
seed development( GO:0048316 )
pollen development( GO:0009555 )
defense response to fungus( GO:0050832 )
response to cold( GO:0009409 )
defense response to insect( GO:0002213 )
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Trait Ontology
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blast disease( TO:0000074 )
yield trait( TO:0000371 )
seed development trait( TO:0000653 )
plant height( TO:0000207 )
sterility related trait( TO:0000485 )
filled grain number( TO:0000447 )
panicle axis angle( TO:0000342 )
anther color( TO:0000187 )
pollen sterility( TO:0000053 )
starch content( TO:0000696 )
panicle size( TO:0006032 )
grain length( TO:0000734 )
cold tolerance( TO:0000303 )
brown planthopper resistance( TO:0000424 )
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Plant Ontology
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pollen development stage( PO:0001007 )
seed development stage( PO:0001170 )
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Related Strains
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Phenotype images
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Last updated
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Nov 8, 2023
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Update info.