Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol MIR1428E
Gene Symbol Synonym OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p
Gene Name Synonym microRNA1428e, osa-miRNA1428e
Protein Name
Chromosome No. 3
Explanation miRBase accession: MI0008239. Stem-loop predicted structures for osa-miR1428e and osa-miR1428d found in AK102950 (Os03g0611100). miR1428e_3p targets Os08g37800 and Os03g17980 mRNAs, both encoding kinases of the sucrose nonfermenting-related kinase 1 (SnRK1) family (Zhu et al. 2008). EU563913-EU563916. Predicted target(s): Os03g0289100, Os12g0479300, Os08g0484600. LM381019.
Trait Class Other
cDNA Accession No. AK102950
RAP ID Os03g0611100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011  23(12)  4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011  39  D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
Zhu,Q.H., Spriggs,A., Matthew,L., Fan,L., Kennedy,G., Gubler,F. and Helliwell,C.
Genome Res. 2008  18(9)  1456-1465
A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
Lacombe S,Nagasaki H,Santi C,Duval D,Piegu B,Bangratz M,Breitler JC,Guiderdoni E,Brugidou C,Hirsch J,Cao X,Brice C,Panaud O,Karlowski WM,Sato Y,Echeverria M
BMC Plant Biol 2008  8  123
Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice.
TextPresso Search Search textpresso for MIR1428E ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology gene silencing by miRNA( GO:0035195 )
RNA-induced silencing complex( GO:0016442 )
mRNA cleavage( GO:0006379 )
micro-ribonucleoprotein complex( GO:0035068 )
Trait Ontology -
Plant Ontology -
Related Strains
Phenotype images
Last updated
Mar 3, 2016