Update info.Gene - Detail
Detail of Gene
Click here for feedback| Basic Information | |
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| CGSNL Gene Symbol | MIR1428E |
| Gene Symbol Synonym | OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p |
| CGSNL Gene Name | MICRORNA1428E |
| Gene Name Synonym | microRNA1428e, osa-miRNA1428e |
| Protein Name | |
| Allele | |
| Chromosome No. | 3 |
| Explanation | miRBase accession: MI0008239. Stem-loop predicted structures for osa-miR1428e and osa-miR1428d found in AK102950 (Os03g0611100). miR1428e_3p targets Os08g37800 and Os03g17980 mRNAs, both encoding kinases of the sucrose nonfermenting-related kinase 1 (SnRK1) family (Zhu et al. 2008). EU563913-EU563916. Predicted target(s): Os03g0289100, Os12g0479300, Os08g0484600. LM381019. |
| Trait Class |
Other
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| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK102950
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| MSU ID | - |
| RAP ID |
Os03g0611100 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207 Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157 miRBase: integrating microRNA annotation and deep-sequencing data
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Zhu,Q.H., Spriggs,A., Matthew,L., Fan,L., Kennedy,G., Gubler,F. and Helliwell,C.
Genome Res. 2008 18(9) 1456-1465 A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
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Lacombe S,Nagasaki H,Santi C,Duval D,Piegu B,Bangratz M,Breitler JC,Guiderdoni E,Brugidou C,Hirsch J,Cao X,Brice C,Panaud O,Karlowski WM,Sato Y,Echeverria M
BMC Plant Biol 2008 8 123 Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
gene silencing by miRNA( GO:0035195 )
RNA-induced silencing complex( GO:0016442 ) mRNA cleavage( GO:0006379 ) micro-ribonucleoprotein complex( GO:0035068 ) |
| Trait Ontology | - |
| Plant Ontology | - |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Mar 3, 2016 | |
