Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol MIR1425
Gene Symbol Synonym OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p
CGSNL Gene Name MICRORNA1425
Gene Name Synonym microRNA1425, osa-miRNA1425
Protein Name
Allele
Chromosome No. 5
Explanation miRBase accession: MI0006965. LM382873 LM380728. predicted targets: PPR proteins, confirmed target: Os10g0495200. target gene(s): RF-1. targets: Os10g0495200, Os10g0497300, Os03g0191100 (Kansal et al. 2021).
Trait Class Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK101146
MSU ID -
RAP ID Os05g0245700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Kansal S., Panwar V., Mutum R.D., Raghuvanshi S.
Front Plant Sci 2021  12  720009
Investigations on Regulation of MicroRNAs in Rice Reveal [Ca2+]cyt Signal Transduction Regulated MicroRNAs.
Tian C., Zuo Z., Qiu J.L.
J Genet Genomics 2015  42(7)  393-402
Identification and Characterization of ABA-Responsive MicroRNAs in Rice.
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011  23(12)  4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011  39  D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
Lacombe S,Nagasaki H,Santi C,Duval D,Piegu B,Bangratz M,Breitler JC,Guiderdoni E,Brugidou C,Hirsch J,Cao X,Brice C,Panaud O,Karlowski WM,Sato Y,Echeverria M
BMC Plant Biol 2008  8  123
Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice.
TextPresso Search Search textpresso for MIR1425 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to abscisic acid stimulus( GO:0009737 )
calcium-mediated signaling( GO:0019722 )
response to water deprivation( GO:0009414 )
micro-ribonucleoprotein complex( GO:0035068 )
gene silencing by miRNA( GO:0035195 )
mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
Trait Ontology drought tolerance( TO:0000276 )
abscisic acid sensitivity( TO:0000615 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
May 20, 2022


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