Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ASA
Gene Symbol Synonym OsNIP3;1, NIP3;1, NIP3-1, OsNIP3.1, NIP3.1, OsASA
CGSNL Gene Name APICAL SPIKELET ABORTION
Gene Name Synonym Aquaporin NIP3-1, NOD26-like intrinsic protein 3-1, nodulin 26-like intrinsic protein 3-1, apical spikelet abortion
Protein Name NOD26 LIKE INTRINSIC PROTEIN 3;1
Allele nip3;1-1, nip3;1-2, asa
Chromosome No. 10
Explanation AB856420. AC068924. Q0IWF3. GO:1901684: arsenate ion transmembrane transport. GO:0035445: borate transmembrane transport. TO:1000053: shoot system boron content. TO:0006043: boron content. PO:0030123: panicle inflorescence. GO:2000377: regulation of reactive oxygen species metabolic process. TO:1000023: lemma morphology trait. TO:1000024: palea morphology trait. TO:1000023: lemma morphology trait.
Trait Class Biochemical character
Reproductive organ - Inflorescence
Reproductive organ - panicle
Reproductive organ - Pollination, fertilization, fertility
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Expression
Sequence/Locus
cDNA Accession No. CT835801
MSU ID LOC_Os10g36924.1
RAP ID Os10g0513200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Zhou D., Shen W., Cui Y., Liu Y., Zheng X., Li Y., Wu M., Fang S., Liu C., Tang M., Yi Y., Zhao M., Chen L.
Front Plant Sci 2021  12  636877
APICAL SPIKELET ABORTION (ASA) Controls Apical Panicle Development in Rice by Regulating Salicylic Acid Biosynthesis.
Shao J.F., Yamaji N., Liu X.W., Yokosho K., Shen R.F., Ma J.F.
Plant Physiol. 2018  176(2)  1739-1750
Preferential Distribution of Boron to Developing Tissues Is Mediated by the Intrinsic Protein OsNIP3.
Chen Y., Han Y.H., Cao Y., Zhu Y.G., Rathinasabapathi B., Ma L.Q.
Front Plant Sci 2017  8  268
Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice.
Denancé N., Szurek B., Noël LD.
Plant Cell Physiol. 2014  55(3)  469-74
Emerging functions of nodulin-like proteins in non-nodulating plant species.
Mitani N,Yamaji N,Ma JF
Pflugers Arch 2008  456  679-86
Characterization of substrate specificity of a rice silicon transporter, Lsi1.
Kerrie L. Forrest, Bhave M.
Funct. Integr. Genomics 2007  7  263-289
Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype
Sakurai J, Ishikawa F, Yamaguchi T, Uemura M, Maeshima M
Plant Cell Physiol. 2005  46(9)  1568-77
Identification of 33 rice aquaporin genes and analysis of their expression and function
DB Reference
Gramene ID -
Ontologies
Gene Ontology integral to membrane( GO:0016021 )
microsporogenesis( GO:0009556 )
pollen development( GO:0009555 )
tapetal layer formation( GO:0048656 )
regulation of salicylic acid biosynthetic process( GO:0080142 )
regulation of salicylic acid metabolic process( GO:0010337 )
inflorescence development( GO:0010229 )
transporter activity( GO:0005215 )
plastid( GO:0009536 )
membrane( GO:0016020 )
transmembrane transport( GO:0055085 )
response to boron( GO:0010036 )
Trait Ontology inflorescence development trait( TO:0000621 )
spikelet anatomy and morphology trait( TO:0000657 )
plant height( TO:0000207 )
tiller number( TO:0000346 )
pollen fertility( TO:0000421 )
hydrogen peroxide content( TO:0000605 )
lemma shape( TO:0000614 )
anther shape( TO:0000214 )
anther color( TO:0000187 )
anther number( TO:0000210 )
lodicule shape( TO:0006011 )
Plant Ontology shoot node( PO:0005004 )
xylem( PO:0005352 )
parenchyma cell( PO:0000074 )
inflorescence development stage( PO:0001083 )
peduncle( PO:0009053 )
inflorescence( PO:0009049 )
anther( PO:0009066 )
pollen development stage( PO:0001007 )
Related Strains
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Phenotype images
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Last updated
Jun 28, 2021

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