Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol DEP1
Gene Symbol Synonym OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
Gene Name Synonym dense and erect panicle 1, erect-pose panicle, DENSE PANICLE 1, DENSE AND ERECT PANICLE1, DENSE AND ERECT PANICLES 1, G gamma subunit DEP1, Heterotrimeric G Protein gamma4 Subunit
Protein Name
Allele dep1, Osdep1, Dn1-1, Dn1-2, Dn1-3, dep1-1, dep1-2, dep1-32, DEP1-A, DEP1-B
Chromosome No. 9
Explanation FJ039905, FJ039904. AB475006, AB475007. Putative keratin associated protein. phosphatidylethanolamine-binding protein-like domain protein. Reduce length of the inflorescence internodes. TO:0000800: inflorescence density (panicle density), TO:0000847: panicle anatomy and morphology trait. a major rice nitrogen-use efficiency quantitative trait locus qNGR9. TO:0000975: grain width.
Trait Class Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Reproductive organ - Heading date
Reproductive organ - Panicle, Mode of branching
Vegetative organ - Culm
Seed - Morphological traits - Grain shape
cDNA Accession No. AK101247
MSU ID LOC_Os09g26999.1
RAP ID Os09g0441900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Ferrero-Serrano Á., Chakravorty D., Kirven K.J., Assmann S.M.
bioRxiv 2023   
Oryza CLIMtools: An Online Portal for Investigating Genome-Environment Associations in Rice.
Gu Z., Gong J., Zhu Z., Li Z., Feng Q., Wang C., Zhao Y., Zhan Q., Zhou C., Wang A., Huang T., Zhang L., Tian Q., Fan D., Lu Y., Zhao Q., Huang X., Yang S., Han B.
Nat. Genet. 2023  55(10)  1745-1756
Structure and function of rice hybrid genomes reveal genetic basis and optimal performance of heterosis.
Wang Y., Lv Y., Yu H., Hu P., Wen Y., Wang J., Tan Y., Wu H., Zhu L., Wu K., Chai B., Liu J., Zeng D., Zhang G., Zhu L., Gao Z., Dong G., Ren D., Shen L., Zhang Q., Li Q., Guo L., Xiong G., Qian Q., Hu J.
Plant Commun 2023    100673
GR5 acts in the G protein pathway to regulate grain size in rice.
Chaya G., Segami S., Fujita M., Morinaka Y., Iwasaki Y., Miura K.
Plants (Basel) 2022  11(3) 
<i>OsGGC2</i>, Ggamma Subunit of Heterotrimeric G Protein, Regulates plant height by Functionally Overlapping with <i>DEP1</i> in Rice.
Hu J., Huang L., Chen G., Liu H., Zhang Y., Zhang R., Zhang S., Liu J., Hu Q., Hu F., Wang W., Ding Y.
Rice (N Y) 2021  14(1)  90
The Elite Alleles of OsSPL4 Regulate grain size and Increase Grain Yield in Rice.
Cui Y., Jiang N., Xu Z., Xu Q.
BMC Plant Biol. 2020  20(1)  90
Heterotrimeric G protein are involved in the regulation of multiple agronomic traits and stress tolerance in rice.
Li P., Li H., Liu Z., Zhuang Y., Wei M., Gu Y., Liu Y., Sun X., Tang Y., Yue L., Lu L., Luo D., Huang W., Tu S., Wang S.
Rice (N Y) 2020  13(1)  73
Characterization of the 'Oat-like rice' Caused by a Novel Allele OsMADS1Olr Reveals Vital Importance of OsMADS1 in Regulating grain shape in Oryza sativa L.
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Duan E., Wang Y., Li X., Lin Q., Zhang T., Wang Y., Zhou C., Zhang H., Jiang L., Wang J., Lei C., Zhang X., Guo X., Wang H., Wan J.
Plant Cell 2019  31(5)  1026-1042
OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.
Yuan H., Qin P., Hu L., Zhan S., Wang S., Gao P., Li J., Jin M., Xu Z., Gao Q., Du A., Tu B., Chen W., Ma B., Wang Y., Li S.
J Genet Genomics 2019  46(1)  41-51
OsSPL18 controls grain weight and grain number in rice.
Sun S., Wang L., Mao H., Shao L., Li X., Xiao J., Ouyang Y., Zhang Q.
Nat Commun 2018  9(1)  851
A G-protein pathway determines grain rice.
Ngangkham U., Samantaray S., Yadav M.K., Kumar A., Chidambaranathan P., Katara J.L.
PLoS ONE 2018  13(1)  e0190684
Effect of multiple allelic combinations of genes on regulating grain rice.
Jiang D., Chen W., Dong J., Li J., Yang F., Wu Z., Zhou H., Wang W., Zhuang C.
J. Exp. Bot. 2018  69(7)  1533-1543
Overexpression of miR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.
Qin R., Zeng D., Yang C., Akhter D., Alamin M., Jin X., Shi C.
Genes (Basel) 2018  9(6) 
<i>LTBSG1</i>, a New Allele of <i>BRD2</i>, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.
Wang J., Zhou L., Shi H., Chern M., Yu H., Yi H., He M., Yin J., Zhu X., Li Y., Li W., Liu J., Wang J., Chen X., Qing H., Wang Y., Liu G., Wang W., Li P., Wu X., Zhu L., Zhou J.M., Ronald P.C., Li S., Li J., Chen X.
Science 2018  361(6406)  1026-1028
A single transcription factor promotes both yield and immunity in rice.
Matsuta S., Nishiyama A., Chaya G., Itoh T., Miura K., Iwasaki Y.
Int J Mol Sci 2018  19(11) 
Characterization of Heterotrimeric G Protein gamma4 Subunit in Rice.
Wang J., Yu H., Xiong G., Lu Z., Jiao Y., Meng X., Liu G., Chen X., Wang Y., Li J.
Plant Cell 2017  29(4)  697-707
Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.
Zhou H., Xia D., Zeng J., Jiang G., He Y.
Rice (N Y) 2017  10(1)  39
Dissecting combining ability effect in a rice NCII-III population provides insights into heterosis in indica-japonica cross.
Wang S., Wu K., Qian Q., Liu Q., Li Q., Pan Y., Ye Y., Liu X., Wang J., Zhang J., Li S., Wu Y., Fu X.
Cell Res. 2017  27(9)  1142-1156
Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.
Kim S.R., Ramos J., Ashikari M., Virk P.S., Torres E.A., Nissila E., Hechanova S.L., Mauleon R., Jena K.K.
Rice (N Y) 2016  9(1)  12
Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
Zheng X., Yang S., Zhang D., Zhong Z., Tang X., Deng K., Zhou J., Qi Y., Zhang Y.
Plant Cell Rep. 2016   
Effective screen of CRISPR/Cas9-induced mutants in rice by single-strand conformation polymorphism.
Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014  537(1)  1-5
Tillering and panicle branching genes in rice.
Sun H., Qian Q., Wu K., Luo J., Wang S., Zhang C., Ma Y., Liu Q., Huang X., Yuan Q., Han R., Zhao M., Dong G., Guo L., Zhu X., Gou Z., Wang W., Wu Y., Lin H., Fu X.
Nat. Genet. 2014  46(6)  652-6
Heterotrimeric G proteins regulate nitrogen-use efficiency in rice.
Wang M., Yu Y., Haberer G., Marri P.R., Fan C., Goicoechea J.L., Zuccolo A., Song X., Kudrna D., Ammiraju J.S., Cossu R.M., Maldonado C., Chen J., Lee S., Sisneros N., de Baynast K., Golser W., Wissotski M., Kim W., Sanchez P., Ndjiondjop M.N., Sanni K., Long M., Carney J., Panaud O., Wicker T., Machado C.A., Chen M., Mayer K.F., Rounsley S., Wing R.A.
Nat. Genet. 2014  46(9)  982-8
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.
Purugganan M.D.
Nat. Genet. 2014  46(9)  931-2
An evolutionary genomic tale of two rice species.
Lu Z., Yu H., Xiong G., Wang J., Jiao Y., Liu G., Jing Y., Meng X., Hu X., Qian Q., Fu X., Wang Y., Li J.
Plant Cell 2013  25(10)  3743-59
Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture.
Kunihiro S., Saito T., Matsuda T., Inoue M., Kuramata M., Taguchi-Shiobara F., Youssefian S., Berberich T., Kusano T.
J. Exp. Bot. 2013  64(14)  4517-27
Rice DEP1, encoding a highly cysteine-rich G protein gamma subunit, confers cadmium tolerance on yeast cells and plants.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Shahinnia F., Druka A., Franckowiak J., Morgante M., Waugh R., Stein N.
Theoretical and Applied Genetics 2012  124  373-384
High resolution mapping of dense spike-ar ( to the genetic centromere of barley chromosome 7H
Taguchi-Shiobara F., Kawagoe Y., Kato H., Onodera H., Tagiri A., Hara N., Miyao A., Hirochika H., Kitano H., Yano M., Toki S.
Breed. Sci. 2011  61  17-25
A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets
Zhou Y,Zhu J,Li Z,Yi C,Liu J,Zhang H,Tang S,Gu M,Liang G
Genetics 2009  183(1)  315-24
Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication.
Wang J,Nakazaki T,Chen S,Chen W,Saito H,Tsukiyama T,Okumoto Y,Xu Z,Tanisaka T
Theor. Appl. Genet. 2009  119  85-91
Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.).
Huang,X., Qian,Q., Liu,Z., Sun,H., He,S., Luo,D., Xia,G., Chu,C., Li,J. and Fu,X.
Nat Genet 2009  41(4)  494-497
Natural variation at the DEP1 locus enhances grain yield in rice
Yan CJ,Zhou JH,Yan S,Chen F,Yeboah M,Tang SZ,Liang GH,Gu MH
Theor. Appl. Genet. 2007  115  1093-1100
Identification and characterization of a major QTL responsible for erect panicle trait in japonica rice (Oryza sativa L.).
Fan Na Kong, Jia Yu Wang, Ji Cheng Zou, Li Xue Shi, Min De Jin, Zheng Jin Xu and Bin Wang
Molecular Breeding 2007  19  297-304
Molecular tagging and mapping of the erect panicle gene in rice
TextPresso Search Search textpresso for DEP1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to water deprivation( GO:0009414 )
response to cold( GO:0009409 )
response to salt stress( GO:0009651 )
photoperiodism, flowering( GO:0048573 )
intermediate filament( GO:0005882 )
regulation of nitrogen compound metabolic process( GO:0051171 )
G-protein coupled receptor protein signaling pathway( GO:0007186 )
plasma membrane( GO:0005886 )
Trait Ontology grain number( TO:0002759 )
inflorescence branching( TO:0000050 )
grain yield( TO:0000396 )
plant height( TO:0000207 )
grain size( TO:0000397 )
spikelet number( TO:0000456 )
grain length to width ratio( TO:0002731 )
1000-seed weight( TO:0000382 )
panicle number( TO:0000152 )
days to heading( TO:0000137 )
seed set percent( TO:0000455 )
salt tolerance( TO:0006001 )
cold tolerance( TO:0000303 )
drought tolerance( TO:0000276 )
grain length( TO:0000734 )
panicle length( TO:0000040 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Jan 17, 2024