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Basic Information
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CGSNL Gene Symbol
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DEP1
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Gene Symbol Synonym
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OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
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CGSNL Gene Name
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DENSE AND ERECT PANICLE 1
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Gene Name Synonym
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dense and erect panicle 1, erect-pose panicle, DENSE PANICLE 1, DENSE AND ERECT PANICLE1, DENSE AND ERECT PANICLES 1, G gamma subunit DEP1, Heterotrimeric G Protein gamma4 Subunit
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Protein Name
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Allele
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dep1, Osdep1, Dn1-1, Dn1-2, Dn1-3, dep1-1, dep1-2, dep1-32, DEP1-A, DEP1-B
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Chromosome No.
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9
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Explanation
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FJ039905, FJ039904. AB475006, AB475007. Putative keratin associated protein. phosphatidylethanolamine-binding protein-like domain protein. Reduce length of the inflorescence internodes. TO:0000800: inflorescence density (panicle density), TO:0000847: panicle anatomy and morphology trait. a major rice nitrogen-use efficiency quantitative trait locus qNGR9. TO:0000975: grain width.
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Trait Class
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Reproductive organ - Panicle, Mode of branching
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
Vegetative organ - Root
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK101247
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MSU ID
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LOC_Os09g26999.1
LOC_Os09g26999.2
LOC_Os09g26999.3
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RAP ID
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Os09g0441900
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Ferrero-Serrano Á., Chakravorty D., Kirven K.J., Assmann S.M.
Plant Commun 2024 5(4) 100813
Oryza CLIMtools: A genome-environment association resource reveals adaptive roles for heterotrimeric G proteins in the regulation of rice agronomic traits.
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Mai H., Qin T., Wei H., Yu Z., Pang G., Liang Z., Ni J., Yang H., Tang H., Xiao L., Liu H., Liu T.
Plant Biotechnol. J. 2024 22(4) 833-847
Overexpression of OsACL5 triggers environmentally-dependent leaf rolling and reduces grain size in rice.
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Ferrero-Serrano Á., Chakravorty D., Kirven K.J., Assmann S.M.
bioRxiv 2023
Oryza CLIMtools: An Online Portal for Investigating Genome-Environment Associations in Rice.
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Wei S., Tanaka R., Kawakatsu T., Teramoto S., Tanaka N., Shenton M., Uga Y., Yabe S.
Rice (N Y) 2023 16(1) 55
Genome- and Transcriptome-wide Association Studies to Discover Candidate Genes for Diverse Root Phenotypes in Cultivated Rice.
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Gu Z., Gong J., Zhu Z., Li Z., Feng Q., Wang C., Zhao Y., Zhan Q., Zhou C., Wang A., Huang T., Zhang L., Tian Q., Fan D., Lu Y., Zhao Q., Huang X., Yang S., Han B.
Nat. Genet. 2023 55(10) 1745-1756
Structure and function of rice hybrid genomes reveal genetic basis and optimal performance of heterosis.
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Wang Y., Lv Y., Yu H., Hu P., Wen Y., Wang J., Tan Y., Wu H., Zhu L., Wu K., Chai B., Liu J., Zeng D., Zhang G., Zhu L., Gao Z., Dong G., Ren D., Shen L., Zhang Q., Li Q., Guo L., Xiong G., Qian Q., Hu J.
Plant Commun 2023 100673
GR5 acts in the G protein pathway to regulate grain size in rice.
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Chaya G., Segami S., Fujita M., Morinaka Y., Iwasaki Y., Miura K.
Plants (Basel) 2022 11(3)
<i>OsGGC2</i>, Ggamma Subunit of Heterotrimeric G Protein, Regulates plant height by Functionally Overlapping with <i>DEP1</i> in Rice.
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Hu J., Huang L., Chen G., Liu H., Zhang Y., Zhang R., Zhang S., Liu J., Hu Q., Hu F., Wang W., Ding Y.
Rice (N Y) 2021 14(1) 90
The Elite Alleles of OsSPL4 Regulate grain size and Increase Grain Yield in Rice.
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Li P., Li H., Liu Z., Zhuang Y., Wei M., Gu Y., Liu Y., Sun X., Tang Y., Yue L., Lu L., Luo D., Huang W., Tu S., Wang S.
Rice (N Y) 2020 13(1) 73
Characterization of the 'Oat-like rice' Caused by a Novel Allele OsMADS1Olr Reveals Vital Importance of OsMADS1 in Regulating grain shape in Oryza sativa L.
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Cui Y., Jiang N., Xu Z., Xu Q.
BMC Plant Biol. 2020 20(1) 90
Heterotrimeric G protein are involved in the regulation of multiple agronomic traits and stress tolerance in rice.
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Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
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Duan E., Wang Y., Li X., Lin Q., Zhang T., Wang Y., Zhou C., Zhang H., Jiang L., Wang J., Lei C., Zhang X., Guo X., Wang H., Wan J.
Plant Cell 2019 31(5) 1026-1042
OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.
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Yuan H., Qin P., Hu L., Zhan S., Wang S., Gao P., Li J., Jin M., Xu Z., Gao Q., Du A., Tu B., Chen W., Ma B., Wang Y., Li S.
J Genet Genomics 2019 46(1) 41-51
OsSPL18 controls grain weight and grain number in rice.
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Qin R., Zeng D., Yang C., Akhter D., Alamin M., Jin X., Shi C.
Genes (Basel) 2018 9(6)
<i>LTBSG1</i>, a New Allele of <i>BRD2</i>, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.
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Ngangkham U., Samantaray S., Yadav M.K., Kumar A., Chidambaranathan P., Katara J.L.
PLoS ONE 2018 13(1) e0190684
Effect of multiple allelic combinations of genes on regulating grain size.in rice.
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Sun S., Wang L., Mao H., Shao L., Li X., Xiao J., Ouyang Y., Zhang Q.
Nat Commun 2018 9(1) 851
A G-protein pathway determines grain size.in rice.
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Jiang D., Chen W., Dong J., Li J., Yang F., Wu Z., Zhou H., Wang W., Zhuang C.
J. Exp. Bot. 2018 69(7) 1533-1543
Overexpression of miR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.
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Wang J., Zhou L., Shi H., Chern M., Yu H., Yi H., He M., Yin J., Zhu X., Li Y., Li W., Liu J., Wang J., Chen X., Qing H., Wang Y., Liu G., Wang W., Li P., Wu X., Zhu L., Zhou J.M., Ronald P.C., Li S., Li J., Chen X.
Science 2018 361(6406) 1026-1028
A single transcription factor promotes both yield and immunity in rice.
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Matsuta S., Nishiyama A., Chaya G., Itoh T., Miura K., Iwasaki Y.
Int J Mol Sci 2018 19(11)
Characterization of Heterotrimeric G Protein gamma4 Subunit in Rice.
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Zhou H., Xia D., Zeng J., Jiang G., He Y.
Rice (N Y) 2017 10(1) 39
Dissecting combining ability effect in a rice NCII-III population provides insights into heterosis in indica-japonica cross.
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Wang J., Yu H., Xiong G., Lu Z., Jiao Y., Meng X., Liu G., Chen X., Wang Y., Li J.
Plant Cell 2017 29(4) 697-707
Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.
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Wang S., Wu K., Qian Q., Liu Q., Li Q., Pan Y., Ye Y., Liu X., Wang J., Zhang J., Li S., Wu Y., Fu X.
Cell Res. 2017 27(9) 1142-1156
Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.
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Zheng X., Yang S., Zhang D., Zhong Z., Tang X., Deng K., Zhou J., Qi Y., Zhang Y.
Plant Cell Rep. 2016
Effective screen of CRISPR/Cas9-induced mutants in rice by single-strand conformation polymorphism.
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Kim S.R., Ramos J., Ashikari M., Virk P.S., Torres E.A., Nissila E., Hechanova S.L., Mauleon R., Jena K.K.
Rice (N Y) 2016 9(1) 12
Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
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Sun H., Qian Q., Wu K., Luo J., Wang S., Zhang C., Ma Y., Liu Q., Huang X., Yuan Q., Han R., Zhao M., Dong G., Guo L., Zhu X., Gou Z., Wang W., Wu Y., Lin H., Fu X.
Nat. Genet. 2014 46(6) 652-6
Heterotrimeric G proteins regulate nitrogen-use efficiency in rice.
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Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014 537(1) 1-5
Tillering and panicle branching genes in rice.
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Wang M., Yu Y., Haberer G., Marri P.R., Fan C., Goicoechea J.L., Zuccolo A., Song X., Kudrna D., Ammiraju J.S., Cossu R.M., Maldonado C., Chen J., Lee S., Sisneros N., de Baynast K., Golser W., Wissotski M., Kim W., Sanchez P., Ndjiondjop M.N., Sanni K., Long M., Carney J., Panaud O., Wicker T., Machado C.A., Chen M., Mayer K.F., Rounsley S., Wing R.A.
Nat. Genet. 2014 46(9) 982-8
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.
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Purugganan M.D.
Nat. Genet. 2014 46(9) 931-2
An evolutionary genomic tale of two rice species.
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Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013 16(2) 213-20
Genes offering the potential for designing yield-related traits in rice.
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Kunihiro S., Saito T., Matsuda T., Inoue M., Kuramata M., Taguchi-Shiobara F., Youssefian S., Berberich T., Kusano T.
J. Exp. Bot. 2013 64(14) 4517-27
Rice DEP1, encoding a highly cysteine-rich G protein gamma subunit, confers cadmium tolerance on yeast cells and plants.
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Lu Z., Yu H., Xiong G., Wang J., Jiao Y., Liu G., Jing Y., Meng X., Hu X., Qian Q., Fu X., Wang Y., Li J.
Plant Cell 2013 25(10) 3743-59
Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture.
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Shahinnia F., Druka A., Franckowiak J., Morgante M., Waugh R., Stein N.
Theoretical and Applied Genetics 2012 124 373-384
High resolution mapping of dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H
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Taguchi-Shiobara F., Kawagoe Y., Kato H., Onodera H., Tagiri A., Hara N., Miyao A., Hirochika H., Kitano H., Yano M., Toki S.
Breed. Sci. 2011 61 17-25
A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets
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Huang,X., Qian,Q., Liu,Z., Sun,H., He,S., Luo,D., Xia,G., Chu,C., Li,J. and Fu,X.
Nat Genet 2009 41(4) 494-497
Natural variation at the DEP1 locus enhances grain yield in rice
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Zhou Y,Zhu J,Li Z,Yi C,Liu J,Zhang H,Tang S,Gu M,Liang G
Genetics 2009 183(1) 315-24
Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication.
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Wang J,Nakazaki T,Chen S,Chen W,Saito H,Tsukiyama T,Okumoto Y,Xu Z,Tanisaka T
Theor. Appl. Genet. 2009 119 85-91
Identification and characterization of the erect-pose panicle gene EP conferring high grain yield in rice (Oryza sativa L.).
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Yan CJ,Zhou JH,Yan S,Chen F,Yeboah M,Tang SZ,Liang GH,Gu MH
Theor. Appl. Genet. 2007 115 1093-1100
Identification and characterization of a major QTL responsible for erect panicle trait in japonica rice (Oryza sativa L.).
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Fan Na Kong, Jia Yu Wang, Ji Cheng Zou, Li Xue Shi, Min De Jin, Zheng Jin Xu and Bin Wang
Molecular Breeding 2007 19 297-304
Molecular tagging and mapping of the erect panicle gene in rice
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TextPresso Search
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Search textpresso for DEP1
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to water deprivation( GO:0009414 )
response to cold( GO:0009409 )
response to salt stress( GO:0009651 )
photoperiodism, flowering( GO:0048573 )
intermediate filament( GO:0005882 )
regulation of nitrogen compound metabolic process( GO:0051171 )
G-protein coupled receptor protein signaling pathway( GO:0007186 )
plasma membrane( GO:0005886 )
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Trait Ontology
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grain number( TO:0002759 )
inflorescence branching( TO:0000050 )
grain yield( TO:0000396 )
plant height( TO:0000207 )
grain size( TO:0000397 )
spikelet number( TO:0000456 )
grain length to width ratio( TO:0002731 )
1000-seed weight( TO:0000382 )
panicle number( TO:0000152 )
days to heading( TO:0000137 )
seed set percent( TO:0000455 )
salt tolerance( TO:0006001 )
cold tolerance( TO:0000303 )
drought tolerance( TO:0000276 )
grain length( TO:0000734 )
panicle length( TO:0000040 )
root anatomy and morphology trait( TO:0000043 )
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Jun 18, 2024
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