Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol HAP5F
Gene Symbol Synonym OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5
CGSNL Gene Name HAP5F SUBUNIT OF CCAAT-BOX BINDING COMPLEX
Gene Name Synonym Nuclear factor Y C5 subunit, Nuclear factor Y C subunit 5, NUCLEAR FACTOR-Y subunit C5, NUCLEAR FACTOR-Y subunit NF-YC5, NF-YC subunit 5, NF-YC family 5
Protein Name HAP5F SUBUNIT OF CCAAT-BOX BINDING COMPLEX
Allele osnf-yc5
Chromosome No. 8
Explanation AB288046. GO:1902040: positive regulation of seed dormancy process. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1903285: positive regulation of hydrogen peroxide catabolic process. GO:1903427: negative regulation of reactive oxygen species biosynthetic process. GO:0090351: seedling development. TO:0000949: seedling growth and development trait.
Trait Class Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os08g10560.1
RAP ID Os08g0206500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Xie K., Ren Y., Huang Y., Wang L., Li L., Ye H., Yang C., Wang S., Xu G., Chen A.
Plant J. 2025  121(2)  e17195
A conserved nuclear factor YC subunit, NF-YC3, is essential for arbuscule development.
Jin X., Li X., Xie Z., Sun Y., Jin L., Hu T., Huang J.
Plant Physiol. 2023   
OsNUCLEAR FACTOR-YC5 modulates rice seed germination by regulating synergistic hormone signaling.
Yanga W., Lub Z., Xionga Y., Yaoa J.
The Crop Journal 2017  5(1)  21-31
Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice
Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.
J. Exp. Bot. 2016  67(6)  1759-68
Duplication of OsHAP family genes and their association with heading date in rice.
Chen M., Zhao Y., Zhuo C., Lu S., Guo Z.
Plant Biotechnol. J. 2014   
Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
Liang M., Yin X., Lin Z., Zheng Q., Liu G., Zhao G.
Planta 2014  239(1)  107-26
Identification and characterization of NF-Y transcription factor families in Canola (Brassica napus L.).
Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.
Plant Cell 2012  24(12)  4777-92
The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.
Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.
Mol. Genet. Genomics 2008  279(3)  279-289
Identification, characterization and interaction of HAP family genes in rice
DB Reference
Gramene ID -
Ontologies
Gene Ontology nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
response to abscisic acid stimulus( GO:0009737 )
CCAAT-binding factor complex( GO:0016602 )
positive regulation of abscisic acid biosynthetic process( GO:0010116 )
negative regulation of hydrogen peroxide biosynthetic process( GO:0010730 )
hydrogen peroxide catabolic process( GO:0042744 )
response to jasmonic acid stimulus( GO:0009753 )
response to oxidative stress( GO:0006979 )
negative regulation of seed germination( GO:0010187 )
seed dormancy( GO:0010162 )
jasmonic acid mediated signaling pathway( GO:0009867 )
abscisic acid catabolic process( GO:0046345 )
abscisic acid mediated signaling( GO:0009738 )
seed germination( GO:0009845 )
Trait Ontology drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
abscisic acid sensitivity( TO:0000615 )
seed development trait( TO:0000653 )
germination rate( TO:0000430 )
abscisic acid content( TO:0002667 )
seed dormancy( TO:0000253 )
oxidative stress( TO:0002657 )
jasmonic acid sensitivity( TO:0000172 )
hydrogen peroxide content( TO:0000605 )
seedling height( TO:0000019 )
seedling vigor( TO:0000280 )
Plant Ontology 0 seed germination stage( PO:0007057 )
Related Strains
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Phenotype images
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Last updated
Mar 23, 2026

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