|
Basic Information
|
|
CGSNL Gene Symbol
|
HAP5C
|
|
Gene Symbol Synonym
|
OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1
|
|
CGSNL Gene Name
|
HAP5C SUBUNIT OF CCAAT-BOX BINDING COMPLEX
|
|
Gene Name Synonym
|
Nuclear factor Y C2 subunit, Nuclear factor Y C subunit 2, NUCLEAR FACTOR-Y subunit C2, NUCLEAR FACTOR-Y subunit NF-YC2, NF-YC subunit 2, NF-YC family 2
|
|
Protein Name
|
HAP5C SUBUNIT OF CCAAT-BOX BINDING COMPLEX
|
|
Allele
|
|
|
Chromosome No.
|
3
|
|
Explanation
|
AB288043. an AtNF-YC4 homolog. OsNF-YC4-1 in Li et al. 2015. Protein Data Bank under PDB:7C9O (DNA-bound HD1CCT/GHD8/OsNF-YC2) and PDB:7C9P (GHD8/OsNF-YC2).
|
|
Trait Class
|
Reproductive organ - Heading date
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Other
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
CT836539
|
|
MSU ID
|
LOC_Os03g14669.1
LOC_Os03g14669.2
|
|
RAP ID
|
Os03g0251350
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
-
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Xie K., Ren Y., Huang Y., Wang L., Li L., Ye H., Yang C., Wang S., Xu G., Chen A.
Plant J. 2025 121(2) e17195
A conserved nuclear factor YC subunit, NF-YC3, is essential for arbuscule development.
|
|
Tan X., Wang G., Cao C., Yang Z., Zhang H., Li Y., Wei Z., Chen J., Sun Z.
Plant Physiol. 2024
Two different viral proteins suppress NUCLEAR FACTOR-YC-mediated antiviral immunity during infection in rice.
|
|
Shen C., Liu H., Guan Z., Yan J., Zheng T., Yan W., Wu C., Zhang Q., Yin P., Xing Y.
Plant Cell 2020 32(11) 3469-3484
Structural Insight into DNA Recognition by CCT/NF-YB/YC Complexes in Plant Photoperiodic Flowering.
|
|
Yanga W., Lub Z., Xionga Y., Yaoa J.
The Crop Journal 2017 5(1) 21-31
Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice
|
|
Hwang Y.H., Kim S.K., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.
Plant Cell Rep. 2016 35(4) 857-65
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
|
|
Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.
J. Exp. Bot. 2016 67(6) 1759-68
Duplication of OsHAP family genes and their association with heading date in rice.
|
|
Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.
Planta 2015
OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
|
|
Li L., Zheng W., Zhu Y., Ye H., Tang B., Arendsee Z.W., Jones D., Li R., Ortiz D., Zhao X., Du C., Nettleton D., Scott M.P., Salas-Fernandez MG., Yin Y., Wurtele E.S.
Proc. Natl. Acad. Sci. U.S.A. 2015 112(47) 14734-9
QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.
|
|
Liang M., Yin X., Lin Z., Zheng Q., Liu G., Zhao G.
Planta 2014 239(1) 107-26
Identification and characterization of NF-Y transcription factor families in Canola (Brassica napus L.).
|
|
Chen M., Zhao Y., Zhuo C., Lu S., Guo Z.
Plant Biotechnol. J. 2014
Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
|
|
Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.
Plant Cell 2012 24(12) 4777-92
The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.
|
|
Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.
Mol. Genet. Genomics 2008 279(3) 279-289
Identification, characterization and interaction of HAP family genes in rice
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
defense response to virus( GO:0051607 )
regulation of defense response to virus( GO:0050688 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
sequence-specific DNA binding( GO:0043565 )
response to water deprivation( GO:0009414 )
response to abscisic acid stimulus( GO:0009737 )
regulation of transcription, DNA-dependent( GO:0006355 )
negative regulation of long-day photoperiodism, flowering( GO:0048579 )
cytoplasm( GO:0005737 )
|
|
Trait Ontology
|
drought tolerance( TO:0000276 )
abscisic acid sensitivity( TO:0000615 )
flowering time( TO:0002616 )
starch content( TO:0000696 )
viral disease resistance( TO:0000148 )
relative plant height( TO:0001034 )
|
|
Plant Ontology
|
-
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Mar 23, 2026
|
Update info.