Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol HAP5B
Gene Symbol Synonym OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3
CGSNL Gene Name HAP5B SUBUNIT OF CCAAT-BOX BINDING COMPLEX
Gene Name Synonym Nuclear factor Y C4 subunit, Nuclear factor Y C subunit 4, NUCLEAR FACTOR-Y subunit C4, NUCLEAR FACTOR-Y subunit NF-YC4, NF-YC subunit 4, NF-YC family 4
Protein Name HAP5B SUBUNIT OF CCAAT-BOX BINDING COMPLEX
Allele Oshap5b
Chromosome No. 6
Explanation AB288042. LOC_Os06g45640. an AtNF-YC4 homolog. OsNF-YC4-3 in Li et al. 2015.
Trait Class Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK066630
AK105079
MSU ID LOC_Os06g45640.1
RAP ID Os06g0667100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Yanga W., Lub Z., Xionga Y., Yaoa J.
The Crop Journal 2017  5(1)  21-31
Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice
Hwang Y.H., Kim S.K., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.
Plant Cell Rep. 2016  35(4)  857-65
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.
J. Exp. Bot. 2016  67(6)  1759-68
Duplication of OsHAP family genes and their association with heading date in rice.
Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.
Planta 2015   
OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
Li L., Zheng W., Zhu Y., Ye H., Tang B., Arendsee Z.W., Jones D., Li R., Ortiz D., Zhao X., Du C., Nettleton D., Scott M.P., Salas-Fernandez MG., Yin Y., Wurtele E.S.
Proc. Natl. Acad. Sci. U.S.A. 2015  112(47)  14734-9
QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.
Chen M., Zhao Y., Zhuo C., Lu S., Guo Z.
Plant Biotechnol. J. 2014   
Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
Liang M., Yin X., Lin Z., Zheng Q., Liu G., Zhao G.
Planta 2014  239(1)  107-26
Identification and characterization of NF-Y transcription factor families in Canola (Brassica napus L.).
Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.
Plant Cell 2012  24(12)  4777-92
The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.
Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.
Mol. Genet. Genomics 2008  279(3)  279-289
Identification, characterization and interaction of HAP family genes in rice
TextPresso Search Search textpresso for HAP5B ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology nucleus( GO:0005634 )
transcription( GO:0006350 )
sequence-specific DNA binding( GO:0043565 )
transcription factor activity( GO:0003700 )
cytoplasm( GO:0005737 )
CCAAT-binding factor complex( GO:0016602 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
response to abscisic acid stimulus( GO:0009737 )
negative regulation of long-day photoperiodism, flowering( GO:0048579 )
photoperiodism, flowering( GO:0048573 )
regulation of transcription, DNA-dependent( GO:0006355 )
Trait Ontology drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
abscisic acid sensitivity( TO:0000615 )
flowering time( TO:0002616 )
days to heading( TO:0000137 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Dec 13, 2017


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