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Basic Information
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CGSNL Gene Symbol
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HAP5A
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Gene Symbol Synonym
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OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2
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CGSNL Gene Name
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HAP5A SUBUNIT OF CCAAT-BOX BINDING COMPLEX
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Gene Name Synonym
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Nuclear factor Y C1 subunit, Nuclear factor Y C subunit 1, NUCLEAR FACTOR-Y subunit C1, NUCLEAR FACTOR-Y subunit NF-YC1, NF-YC subunit 1, NF-YC family 1
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Protein Name
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HAP5A SUBUNIT OF CCAAT-BOX BINDING COMPLEX
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Allele
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osnf-yc1, osnf-yc1-g, osnf-yc1-t
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Chromosome No.
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2
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Explanation
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AB288041. an AtNF-YC4 homolog. OsNF-YC4-2 in Li et al. 2015. PO:0030123: panicle inflorescence.
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Trait Class
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Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Other
Reproductive organ - Heading date
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK243429
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MSU ID
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LOC_Os02g07450.1
LOC_Os02g07450.2
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RAP ID
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Os02g0170500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Xie K., Ren Y., Huang Y., Wang L., Li L., Ye H., Yang C., Wang S., Xu G., Chen A.
Plant J. 2025 121(2) e17195
A conserved nuclear factor YC subunit, NF-YC3, is essential for arbuscule development.
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Cui Z., Wang X., Dai Y., Li Y., Ban Y., Tian W., Zhang X., Feng X., Zhang X., Jia L., He G., Sang X.
Plant J. 2024 119(3) 1465-1480
Transcription factor osnf-yc1 regulates grain size.by coordinating the transcriptional activation of OsMADS1 in Oryza sativa L.
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Tan X., Wang G., Cao C., Yang Z., Zhang H., Li Y., Wei Z., Chen J., Sun Z.
Plant Physiol. 2024
Two different viral proteins suppress NUCLEAR FACTOR-YC-mediated antiviral immunity during infection in rice.
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Goretti D., Martignago D., Landini M., Brambilla V., Gómez-Ariza J., Gnesutta N., Galbiati F., Collani S., Takagi H., Terauchi R., Mantovani R., Fornara F.
PLoS Genet. 2017 13(1) e1006530
Transcriptional and Post-transcriptional Mechanisms Limit HEADING DATE 1 (Hd1) Function to Adapt Rice to High Latitudes.
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Yanga W., Lub Z., Xionga Y., Yaoa J.
The Crop Journal 2017 5(1) 21-31
Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice
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Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.
J. Exp. Bot. 2016 67(6) 1759-68
Duplication of OsHAP family genes and their association with heading date in rice.
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Hwang Y.H., Kim S.K., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.
Plant Cell Rep. 2016 35(4) 857-65
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
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Li L., Zheng W., Zhu Y., Ye H., Tang B., Arendsee Z.W., Jones D., Li R., Ortiz D., Zhao X., Du C., Nettleton D., Scott M.P., Salas-Fernandez MG., Yin Y., Wurtele E.S.
Proc. Natl. Acad. Sci. U.S.A. 2015 112(47) 14734-9
QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.
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Chen M., Zhao Y., Zhuo C., Lu S., Guo Z.
Plant Biotechnol. J. 2014
Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
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Liang M., Yin X., Lin Z., Zheng Q., Liu G., Zhao G.
Planta 2014 239(1) 107-26
Identification and characterization of NF-Y transcription factor families in Canola (Brassica napus L.).
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Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.
Plant Cell 2012 24(12) 4777-92
The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.
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Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.
Mol. Genet. Genomics 2008 279(3) 279-289
Identification, characterization and interaction of HAP family genes in rice
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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nucleus( GO:0005634 )
transcription( GO:0006350 )
sequence-specific DNA binding( GO:0043565 )
regulation of transcription, DNA-dependent( GO:0006355 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
response to abscisic acid stimulus( GO:0009737 )
negative regulation of long-day photoperiodism, flowering( GO:0048579 )
cytoplasm( GO:0005737 )
regulation of defense response to virus( GO:0050688 )
defense response to virus( GO:0051607 )
positive regulation of cell growth( GO:0030307 )
positive regulation of cell proliferation( GO:0008284 )
regulation of seed development( GO:0080050 )
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Trait Ontology
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drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
days to heading( TO:0000137 )
abscisic acid sensitivity( TO:0000615 )
viral disease resistance( TO:0000148 )
relative plant height( TO:0001034 )
grain size( TO:0000397 )
seed development trait( TO:0000653 )
grain weight( TO:0000590 )
grain weight( TO:0000919 )
grain width( TO:0000402 )
grain width( TO:0000975 )
grain thickness( TO:0000399 )
seed size( TO:0000391 )
filled grain number( TO:0000447 )
secondary branch number( TO:0000557 )
1000-seed weight( TO:0000382 )
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Plant Ontology
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seed development stage( PO:0001170 )
inflorescence( PO:0009049 )
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Related Strains
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Phenotype images
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Last updated
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Mar 23, 2026
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Update info.