Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol HAP3K
Gene Symbol Synonym OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41
CGSNL Gene Name HAP3K SUBUNIT OF CCAAT-BOX BINDING COMPLEX
Gene Name Synonym Nuclear transcription factor Y subunit B-1, CCAAT-binding transcription factor subunit NF-YB1, leafy cotyledon 1, endosperm-specific gene 41, Nuclear Factor YB1, NUCLEAR FACTOR-Y subunit B1, NUCLEAR FACTOR-Y subunit NF-YB1, NF-YB subunit 1, NF-YB family 1
Protein Name HAP3 SUBUNIT OF CCAAT-BOX BINDING COMPLEX
Allele osnf-yb1, osnf-yb1-1, osnf-yb1-2
Chromosome No. 2
Explanation AJ300218. NF-YB, CBF-A. Q6Z348. GO:2000014: regulation of endosperm development. GO:2000034: regulation of seed maturation.
Trait Class Seed - Morphological traits
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
Other
Expression
Sequence/Locus
cDNA Accession No. AK241920
MSU ID LOC_Os02g49410.1
RAP ID Os02g0725900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Xiong Y., Ren Y., Li W., Wu F., Yang W., Huang X., Yao J.
J. Exp. Bot. 2019  70(15)  3765-3780
NF-YC12 is a key multi-functional regulator of accumulation of seed storage substances in rice.
E Z., Li T., Zhang H., Liu Z., Deng H., Sharma S., Wei X., Wang L., Niu B., Chen C.
J. Exp. Bot. 2018  69(10)  2495-2510
A group of Nuclear factor Y transcription factors are sub-functionalized during endosperm development in monocots.
Yanga W., Lub Z., Xionga Y., Yaoa J.
The Crop Journal 2017  5(1)  21-31
Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice
Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.
J. Exp. Bot. 2016  67(6)  1759-68
Duplication of OsHAP family genes and their association with heading date in rice.
Xu J.J., Zhang X.F., Xue H.W.
J. Exp. Bot. 2016  67(22)  6399-6411
Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.
Sun X., Ling S., Lu Z., Ouyang Y.D., Liu S., Yao J.
Gene 2014  551(2)  214-21
OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.
Nie D.M., Ouyang Y.D., Wang X., Zhou W., Hu C.G., Yao J.
Gene 2013  530(2)  236-47
Genome-wide analysis of endosperm-specific genes in rice.
Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.
Plant Cell 2012  24(12)  4777-92
The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.
Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.
Mol. Genet. Genomics 2008  279(3)  279-289
Identification, characterization and interaction of HAP family genes in rice
Masiero S, Imbriano C, Ravasio F, Favaro R, Pelucchi N, Gorla MS, Mantovani R, Colombo L, Kater MM.
J. Biol. Chem. 2002  277(29)  26429-35.
Ternary complex formation between MADS-box transcription factors and the histone fold protein NF-YB.
TextPresso Search Search textpresso for HAP3K ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology nucleus( GO:0005634 )
transcription( GO:0006350 )
cell proliferation( GO:0008283 )
endosperm development( GO:0009960 )
sequence-specific DNA binding( GO:0043565 )
seed maturation( GO:0010431 )
regulation of transcription( GO:0045449 )
cytosol( GO:0005829 )
cytoplasm( GO:0005737 )
Trait Ontology seed development trait( TO:0000653 )
seed maturation( TO:0002661 )
grain size( TO:0000397 )
chalky endosperm( TO:0000266 )
seed quality( TO:0000162 )
seed anatomy and morphology trait( TO:0000184 )
seed size( TO:0000391 )
Plant Ontology endosperm( PO:0009089 )
seed maturation stage( PO:0007632 )
endosperm development stage( PO:0007633 )
aleurone layer( PO:0005360 )
Related Strains
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Phenotype images
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Last updated
Mar 4, 2020


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