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Basic Information
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CGSNL Gene Symbol
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HAP3K
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Gene Symbol Synonym
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OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41
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CGSNL Gene Name
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HAP3K SUBUNIT OF CCAAT-BOX BINDING COMPLEX
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Gene Name Synonym
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Nuclear transcription factor Y subunit B-1, CCAAT-binding transcription factor subunit NF-YB1, leafy cotyledon 1, endosperm-specific gene 41, Nuclear Factor YB1, NUCLEAR FACTOR-Y subunit B1, NUCLEAR FACTOR-Y subunit NF-YB1, NF-YB subunit 1, NF-YB family 1
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Protein Name
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HAP3 SUBUNIT OF CCAAT-BOX BINDING COMPLEX
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Allele
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osnf-yb1, osnf-yb1-1, osnf-yb1-2, crnf-yb1, crnf-yb1-4, crnf-yb1-7, crnf-yb1-9, nf-yb1
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Chromosome No.
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2
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Explanation
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AJ300218. NF-YB, CBF-A. Q6Z348. GO:2000014: regulation of endosperm development. GO:2000034: regulation of seed maturation. GO:2000033: regulation of seed dormancy process. TO:0000975: grain width.TO:0001069: cooking quality trait.
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Trait Class
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Seed - Morphological traits
Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Seed - Physiological traits - Dormancy
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Character as QTL - Germination
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK241920
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MSU ID
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LOC_Os02g49410.1
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RAP ID
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Os02g0725900
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Zheng C., Niu S., Yan Y., Zhou G., Peng Y., He Y., Zhou J., Li Y., Xie X.
Int J Mol Sci 2024 25(7)
Moderate Salinity Stress Affects Rice Quality by Influencing Expression of Amylose- and Protein-Content-Associated Genes.
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Wang J.D., Wang J., Huang L.C., Kan L.J., Wang C.X., Xiong M., Zhou P., Zhou L.H., Chen C., Zhao D.S., Fan X.L., Zhang C.Q., Zhou Y., Zhang L., Liu Q.Q., Li Q.F.
Nat Commun 2024 15(1) 4493
ABA-mediated regulation of rice grain quality and seed dormancy via the NF-YB1-SLRL2-bHLH144 Module.
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Liu Z., Li P., Yu L., Hu Y., Du A., Fu X., Wu C., Luo D., Hu B., Dong H., Jiang H., Ma X., Huang W., Yang X., Tu S., Li H.
Int J Mol Sci 2023 24(9)
<i>OsMADS1</i> Regulates Grain Quality, Gene Expressions, and Regulatory Networks of Starch and Storage Protein Metabolisms in Rice.
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Xu X., E Z., Zhang D., Yun Q., Zhou Y., Niu B., Chen C.
Plant Physiol. 2021 185(3) 934-950
OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice.
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Zhang D., Zhang M., Liang J.
Front Plant Sci 2021 12 585174
RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on <i>OsYUC11</i>-Mediated Auxin Biosynthesis in Rice Endosperm Cells.
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Paul P., Dhatt B.K., Miller M., Folsom J.J., Wang Z., Krassovskaya I., Liu K., Sandhu J., Yu H., Zhang C., Obata T., Staswick P., Walia H.
Plant Physiol. 2020 182(2) 933-948
<i>MADS78</i> and <i>MADS79</i> Are Essential Regulators of Early Seed Development in Rice.
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Niu B., Deng H., Li T., Sharma S., Yun Q., Li Q., E Z., Chen C.
J Integr Plant Biol 2020 62(12) 1983-1996
OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa).
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Bello B.K., Hou Y., Zhao J., Jiao G., Wu Y., Li Z., Wang Y., Tong X., Wang W., Yuan W., Wei X., Zhang J.
Plant Biotechnol. J. 2019 17(7) 1222-1235
NF-yb1-YC12-bHLH144 complex directly activates Wx to regulate grain quality in rice (Oryza sativa L.).
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Xiong Y., Ren Y., Li W., Wu F., Yang W., Huang X., Yao J.
J. Exp. Bot. 2019 70(15) 3765-3780
NF-YC12 is a key multi-functional regulator of accumulation of seed storage substances in rice.
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E Z., Li T., Zhang H., Liu Z., Deng H., Sharma S., Wei X., Wang L., Niu B., Chen C.
J. Exp. Bot. 2018 69(10) 2495-2510
A group of Nuclear factor Y transcription factors are sub-functionalized during endosperm development in monocots.
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Yanga W., Lub Z., Xionga Y., Yaoa J.
The Crop Journal 2017 5(1) 21-31
Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice
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Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.
J. Exp. Bot. 2016 67(6) 1759-68
Duplication of OsHAP family genes and their association with heading date in rice.
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Xu J.J., Zhang X.F., Xue H.W.
J. Exp. Bot. 2016 67(22) 6399-6411
Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.
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Sun X., Ling S., Lu Z., Ouyang Y.D., Liu S., Yao J.
Gene 2014 551(2) 214-21
OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.
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Nie D.M., Ouyang Y.D., Wang X., Zhou W., Hu C.G., Yao J.
Gene 2013 530(2) 236-47
Genome-wide analysis of endosperm-specific genes in rice.
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Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.
Plant Cell 2012 24(12) 4777-92
The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.
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Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.
Mol. Genet. Genomics 2008 279(3) 279-289
Identification, characterization and interaction of HAP family genes in rice
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Masiero S, Imbriano C, Ravasio F, Favaro R, Pelucchi N, Gorla MS, Mantovani R, Colombo L, Kater MM.
J. Biol. Chem. 2002 277(29) 26429-35.
Ternary complex formation between MADS-box transcription factors and the histone fold protein NF-YB.
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TextPresso Search
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Search textpresso for HAP3K
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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seed germination on parent plant( GO:0048623 )
seed dormancy( GO:0010162 )
response to abscisic acid stimulus( GO:0009737 )
abscisic acid mediated signaling( GO:0009738 )
response to salt stress( GO:0009651 )
regulation of auxin biosynthetic process( GO:0010600 )
regulation of starch biosynthetic process( GO:0010581 )
seed development( GO:0048316 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
cell proliferation( GO:0008283 )
endosperm development( GO:0009960 )
sequence-specific DNA binding( GO:0043565 )
seed maturation( GO:0010431 )
regulation of transcription( GO:0045449 )
cytosol( GO:0005829 )
cytoplasm( GO:0005737 )
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Trait Ontology
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seed development trait( TO:0000653 )
seed maturation( TO:0002661 )
grain size( TO:0000397 )
chalky endosperm( TO:0000266 )
seed quality( TO:0000162 )
seed anatomy and morphology trait( TO:0000184 )
seed size( TO:0000391 )
auxin content( TO:0002672 )
amylose content( TO:0000196 )
starch content( TO:0000696 )
fat and essential oil content( TO:0000604 )
salt tolerance( TO:0006001 )
abscisic acid sensitivity( TO:0000615 )
seed dormancy( TO:0000253 )
grain length( TO:0000734 )
1000-seed weight( TO:0000382 )
gel consistency( TO:0000211 )
gelatinization temperature( TO:0000462 )
vivipary( TO:0000619 )
peak viscosity( TO:0000409 )
hot paste viscosity( TO:0000408 )
cool paste viscosity( TO:0000379 )
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Plant Ontology
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endosperm( PO:0009089 )
seed maturation stage( PO:0007632 )
endosperm development stage( PO:0007633 )
aleurone layer( PO:0005360 )
seed development stage( PO:0001170 )
central endosperm( PO:0006220 )
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Related Strains
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Phenotype images
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Last updated
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Sep 20, 2024
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