Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol HAP3D
Gene Symbol Synonym OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A
Gene Name Synonym HAP3 subunit D, LEC1-type 3 subunit protein-D, endosperm-specific gene 83, NUCLEAR FACTOR-Y subunit B9, NUCLEAR FACTOR-Y subunit NF-YB9, HAP3 SUBUNIT D, NF-YB subunit 9, NF-YB family 9
Allele osnf-yb9, osnf-yb9-1, osnf-yb9-2
Chromosome No. 6
Explanation AB288035, AB288038. HAP3 SUBUNIT OF CCAAT-BOX BINDING COMPLEX, HAP3, HAP3 subunit of HAP complex, NF-YB, CBF-A. an endosperm-specific LEC1 (LEAFY COTYLEDON1) ortholog. GO:1905613: regulation of developmental vegetative growth.
Trait Class Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Endosperm
Reproductive organ - Heading date
Reproductive organ - Pollination, fertilization, fertility - Sterility
Seed - Morphological traits - Grain shape
Seed - Physiological traits - Storage substances
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Plant growth activity
cDNA Accession No. AK109660
MSU ID LOC_Os06g17480.1
RAP ID Os06g0285200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Niu B., Zhang Z., Zhang J., Zhou Y., Chen C.
Plant J. 2021  106(5)  1233-1246
The rice LEC1-like transcription factor OsNF-YB9 interacts with SPK, an endosperm-specific sucrose synthase protein kinase, and functions in seed development.
Niu B., Deng H., Li T., Sharma S., Yun Q., Li Q., E Z., Chen C.
J Integr Plant Biol 2020  62(12)  1983-1996
OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa).
E Z., Li T., Zhang H., Liu Z., Deng H., Sharma S., Wei X., Wang L., Niu B., Chen C.
J. Exp. Bot. 2018  69(10)  2495-2510
A group of Nuclear factor Y transcription factors are sub-functionalized during endosperm development in monocots.
Yanga W., Lub Z., Xionga Y., Yaoa J.
The Crop Journal 2017  5(1)  21-31
Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice
Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.
J. Exp. Bot. 2016  67(6)  1759-68
Duplication of OsHAP family genes and their association with heading date in rice.
Sarah Russell French, Yousef Abu-Zaitoon, Md Myn Uddin, Bennett K., Heather M Nonhebel
Plants (Basel) 2014  3(1)  95-112
Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.
Nie D.M., Ouyang Y.D., Wang X., Zhou W., Hu C.G., Yao J.
Gene 2013  530(2)  236-47
Genome-wide analysis of endosperm-specific genes in rice.
Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.
Plant Cell 2012  24(12)  4777-92
The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.
Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.
Mol. Genet. Genomics 2008  279(3)  279-289
Identification, characterization and interaction of HAP family genes in rice
TextPresso Search Search textpresso for HAP3D ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0061483
Gene Ontology regulation of cell proliferation( GO:0042127 )
regulation of starch biosynthetic process( GO:0010581 )
seed development( GO:0048316 )
sequence-specific DNA binding( GO:0043565 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
seed germination( GO:0009845 )
regulation of transcription, DNA-dependent( GO:0006355 )
embryonic development( GO:0009790 )
negative regulation of long-day photoperiodism, flowering( GO:0048579 )
cytoplasm( GO:0005737 )
Trait Ontology drought tolerance( TO:0000276 )
embryo related trait( TO:0000064 )
days to heading( TO:0000137 )
sterility related trait( TO:0000485 )
seed development trait( TO:0000653 )
seed length( TO:0000146 )
seed width( TO:0000149 )
seed thickness( TO:0000304 )
chalky endosperm( TO:0000266 )
seed size( TO:0000391 )
grain thickness( TO:0000399 )
grain length( TO:0000734 )
glume length( TO:0020033 )
endosperm color( TO:0000487 )
endosperm related trait( TO:0000575 )
amylose content( TO:0000196 )
starch content( TO:0000696 )
gel consistency( TO:0000211 )
plant height( TO:0000207 )
tiller number( TO:0000346 )
seed fertility( TO:0000639 )
1000-seed weight( TO:0000382 )
pollen fertility( TO:0000421 )
Plant Ontology whole plant( PO:0000003 )
plant embryo( PO:0009009 )
endosperm( PO:0009089 )
seed( PO:0009010 )
seed development stage( PO:0001170 )
Related Strains
Phenotype images
Last updated
Feb 23, 2023