Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol HAP2J
Gene Symbol Synonym OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5
CGSNL Gene Name HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX
Gene Name Synonym NUCLEAR FACTOR-Y subunit A5, NUCLEAR FACTOR-Y subunit NF-YA5, NF-YA transcription factor 5, NF-YA subunit 5, NF-YA family 5, NUCLEAR FACTOR-YA5
Protein Name HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX
Allele Oshap2j, osnfya5
Chromosome No. 7
Explanation BR000374. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1903314: regulation of nitrogen cycle metabolic process. GO:1900056: egative regulation of leaf senescence.
Trait Class Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Character as QTL - Yield and productivity
Tolerance and resistance - Disease resistance
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os07g06470.1
LOC_Os07g06470.2
RAP ID Os07g0158500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Seo J.S., Kim S.H., Shim J.S., Um T., Oh N., Park T., Kim Y.S., Oh S.J., Kim J.K.
Plant Physiol. 2023   
The rice NUCLEAR FACTOR-YA5 and MICRORNA169a module promotes nitrogen utilization during nitrogen deficiency.
Tan X., Zhang H., Yang Z., Wei Z., Li Y., Chen J., Sun Z.
PLoS Pathog. 2022  18(5)  e1010548
NF-YA transcription factors suppress jasmonic acid-mediated antiviral defense and facilitate viral infection in rice.
Yanga W., Lub Z., Xionga Y., Yaoa J.
The Crop Journal 2017  5(1)  21-31
Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice
Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.
J. Exp. Bot. 2016  67(6)  1759-68
Duplication of OsHAP family genes and their association with heading date in rice.
Lee D.K., Kim H.I., Jang G., Chung P.J., Jeong J.S., Kim Y.S., Bang S.W., Jung H., Choi Y.D., Kim J.K.
Plant Sci. 2015  241  199-210
The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.
Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.
Plant Cell 2012  24(12)  4777-92
The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.
Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.
Mol. Genet. Genomics 2008  279(3)  279-289
Identification, characterization and interaction of HAP family genes in rice
DB Reference
Gramene ID -
Ontologies
Gene Ontology leaf senescence( GO:0010150 )
positive regulation of nitrogen utilization( GO:0045848 )
response to starvation( GO:0042594 )
cellular response to nitrogen starvation( GO:0006995 )
jasmonic acid mediated signaling pathway( GO:0009867 )
response to jasmonic acid stimulus( GO:0009753 )
defense response to virus( GO:0051607 )
regulation of transcription, DNA-dependent( GO:0006355 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
sequence-specific DNA binding( GO:0043565 )
CCAAT-binding factor complex( GO:0016602 )
Trait Ontology viral disease resistance( TO:0000148 )
jasmonic acid sensitivity( TO:0000172 )
nitrogen sensitivity( TO:0000011 )
relative yield( TO:0000153 )
amino acid content( TO:0002673 )
chlorophyll content( TO:0000495 )
leaf senescence( TO:0000249 )
relative chlorophyll content( TO:0001016 )
relative plant height( TO:0001034 )
grain number( TO:0002759 )
grain weight( TO:0000590 )
seed weight( TO:0000181 )
Plant Ontology root( PO:0009005 )
stem( PO:0009047 )
Related Strains
-
Phenotype images
-
Last updated
Jan 16, 2024

/rice/oryzabase