Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol HAP2H
Gene Symbol Synonym OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3
CGSNL Gene Name HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX
Gene Name Synonym NUCLEAR FACTOR-Y subunit A3, NUCLEAR FACTOR-Y subunit NF-YA3, NF-YA transcription factor 3, NF-YA subunit 3, NF-YA family 3
Protein Name HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX
Allele Oshap2h, ya3-1, ya3-2
Chromosome No. 3
Explanation AB288034. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:0080148: negative regulation of response to water deprivation. GO:1901001: negative regulation of response to salt stress. TO:0006060: leaf chlorosis. GO:2000377: regulation of reactive oxygen species metabolic process.
Trait Class Vegetative organ - Leaf
Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Other
Expression
Sequence/Locus
cDNA Accession No. AK106398
MSU ID LOC_Os03g44540.1
RAP ID Os03g0647600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Jin X., Zhang Y., Li X., Huang J.
Plant J. 2023  114(4)  914-933
OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.
Tan X., Zhang H., Yang Z., Wei Z., Li Y., Chen J., Sun Z.
PLoS Pathog. 2022  18(5)  e1010548
NF-YA transcription factors suppress jasmonic acid-mediated antiviral defense and facilitate viral infection in rice.
Yanga W., Lub Z., Xionga Y., Yaoa J.
The Crop Journal 2017  5(1)  21-31
Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice
Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.
J. Exp. Bot. 2016  67(6)  1759-68
Duplication of OsHAP family genes and their association with heading date in rice.
Lee D.K., Kim H.I., Jang G., Chung P.J., Jeong J.S., Kim Y.S., Bang S.W., Jung H., Choi Y.D., Kim J.K.
Plant Sci. 2015  241  199-210
The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.
Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.
Plant Cell 2012  24(12)  4777-92
The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.
Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.
Mol. Genet. Genomics 2008  279(3)  279-289
Identification, characterization and interaction of HAP family genes in rice
DB Reference
Gramene ID -
Ontologies
Gene Ontology regulation of hydrogen peroxide biosynthetic process( GO:0010728 )
positive regulation of unidimensional cell growth( GO:0051512 )
negative regulation of abscisic acid biosynthetic process( GO:0090359 )
regulation of stomatal movement( GO:0010119 )
water homeostasis( GO:0030104 )
regulation of gibberellin biosynthetic process( GO:0010371 )
internode patterning( GO:0080006 )
abscisic acid catabolic process( GO:0046345 )
regulation of response to osmotic stress( GO:0047484 )
response to abscisic acid stimulus( GO:0009737 )
negative regulation of abscisic acid mediated signaling( GO:0009788 )
abscisic acid mediated signaling( GO:0009738 )
regulation of gibberellic acid mediated signaling( GO:0009937 )
positive regulation of gibberellin biosynthetic process( GO:0010372 )
gibberellic acid mediated signaling( GO:0009740 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
response to osmotic stress( GO:0006970 )
jasmonic acid mediated signaling pathway( GO:0009867 )
response to jasmonic acid stimulus( GO:0009753 )
defense response to virus( GO:0051607 )
sequence-specific DNA binding( GO:0043565 )
regulation of transcription, DNA-dependent( GO:0006355 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
transcription factor activity( GO:0003700 )
Trait Ontology viral disease resistance( TO:0000148 )
jasmonic acid sensitivity( TO:0000172 )
growth and development trait( TO:0000357 )
osmotic response sensitivity( TO:0000095 )
salt tolerance( TO:0006001 )
drought tolerance( TO:0000276 )
abscisic acid sensitivity( TO:0000615 )
abscisic acid content( TO:0002667 )
internode length( TO:0000145 )
relative water content( TO:0000136 )
stomatal closure rate( TO:0000520 )
gibberellic acid content( TO:0002675 )
seedling height( TO:0000019 )
plant height( TO:0000207 )
leaf rolling tolerance( TO:0002662 )
proline content( TO:0006002 )
hydrogen peroxide content( TO:0000605 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Feb 16, 2025

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