Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol HOX28
Gene Symbol Synonym Oshox28, OsHox28
CGSNL Gene Name HOMEOBOX GENE 28
Gene Name Synonym rice homeobox gene 28, Homeobox-leucine zipper protein HOX28, Homeodomain transcription factor HOX28, HD-ZIP protein HOX28
Protein Name HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX28
Allele
Chromosome No. 6
Explanation EF555549, AK059116. A2Y931(indica), Q5VPE5(japonica).
Trait Class Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK059116
MSU ID LOC_Os06g04850.1
RAP ID Os06g0140400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Mohanty B.
Front Genet 2021  12  639654
Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
Hu Y., Li S., Fan X., Song S., Zhou X., Weng X., Xiao J., Li X., Xiong L., You A., Xing Y.
Plant Physiol. 2020  184(3)  1424-1437
<i>OsHOX1</i> and <i>OsHOX28</i> Redundantly Shape Rice tiller angle by Reducing <i>HSFA2D</i> Expression and Auxin Content.
Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008  66(1-2)  87-103
A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
TextPresso Search Search textpresso for HOX28 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology regulation of auxin biosynthetic process( GO:0010600 )
auxin homeostasis( GO:0010252 )
negative regulation of transcription, DNA-dependent( GO:0045892 )
negative gravitropism( GO:0009959 )
response to deep water( GO:0030912 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
sequence-specific DNA binding( GO:0043565 )
transcription factor activity( GO:0003700 )
regulation of transcription, DNA-dependent( GO:0006355 )
Trait Ontology submergence tolerance( TO:0000524 )
auxin content( TO:0002672 )
tiller angle( TO:0000567 )
gravity response trait( TO:0002693 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Dec 28, 2021


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