Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol HOX28
Gene Symbol Synonym Oshox28, OsHox28, OsHDZ18, OsHDZIP18, HDZ18, HDZIP18
CGSNL Gene Name HOMEOBOX GENE 28
Gene Name Synonym rice homeobox gene 28, Homeobox-leucine zipper protein HOX28, Homeodomain transcription factor HOX28, HD-ZIP protein HOX28, homeodomain-leucine zipper transcription factor 18, OsHDZIP transcription factor 18
Protein Name HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX28
Allele
Chromosome No. 6
Explanation EF555549, AK059116. A2Y931(indica), Q5VPE5(japonica). PO:0030123: panicle inflorescence.
Trait Class Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK059116
MSU ID LOC_Os06g04850.1
RAP ID Os06g0140400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Dai D., Zhang H., He L., Chen J., Du C., Liang M., Zhang M., Wang H., Ma L.
Int J Mol Sci 2022  23(16) 
<i>Panicle Apical Abortion 7</i> Regulates Panicle Development in Rice (<i>Oryza sativa</i> L.).
Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022  9(8) 
The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
Mohanty B.
Front Genet 2021  12  639654
Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
Hu Y., Li S., Fan X., Song S., Zhou X., Weng X., Xiao J., Li X., Xiong L., You A., Xing Y.
Plant Physiol. 2020  184(3)  1424-1437
<i>OsHOX1</i> and <i>OsHOX28</i> Redundantly Shape Rice tiller angle by Reducing <i>HSFA2D</i> Expression and Auxin Content.
Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008  66(1-2)  87-103
A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
DB Reference
Gramene ID -
Ontologies
Gene Ontology regulation of transcription, DNA-dependent( GO:0006355 )
transcription factor activity( GO:0003700 )
sequence-specific DNA binding( GO:0043565 )
nucleus( GO:0005634 )
negative gravitropism( GO:0009959 )
negative regulation of transcription, DNA-dependent( GO:0045892 )
auxin homeostasis( GO:0010252 )
regulation of auxin biosynthetic process( GO:0010600 )
response to salt stress( GO:0009651 )
response to brassinosteroid stimulus( GO:0009741 )
response to deep water( GO:0030912 )
transcription( GO:0006350 )
Trait Ontology submergence tolerance( TO:0000524 )
auxin content( TO:0002672 )
tiller angle( TO:0000567 )
gravity response trait( TO:0002693 )
salt tolerance( TO:0006001 )
brassinosteroid sensitivity( TO:0002677 )
Plant Ontology root( PO:0009005 )
stem( PO:0009047 )
leaf( PO:0025034 )
inflorescence( PO:0009049 )
carpel( PO:0009030 )
plant embryo( PO:0009009 )
Related Strains
-
Phenotype images
-
Last updated
Jan 18, 2023

/rice/oryzabase