Update info.Gene - Detail
Detail of Gene
Click here for feedback| Basic Information | |
|---|---|
| CGSNL Gene Symbol | HOX28 |
| Gene Symbol Synonym | Oshox28, OsHox28 |
| CGSNL Gene Name | HOMEOBOX GENE 28 |
| Gene Name Synonym | rice homeobox gene 28, Homeobox-leucine zipper protein HOX28, Homeodomain transcription factor HOX28, HD-ZIP protein HOX28 |
| Protein Name | HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX28 |
| Allele | |
| Chromosome No. | 6 |
| Explanation | EF555549, AK059116. A2Y931(indica), Q5VPE5(japonica). |
| Trait Class |
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK059116
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| MSU ID |
LOC_Os06g04850.1
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| RAP ID |
Os06g0140400 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Mohanty B.
Front Genet 2021 12 639654 Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
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Hu Y., Li S., Fan X., Song S., Zhou X., Weng X., Xiao J., Li X., Xiong L., You A., Xing Y.
Plant Physiol. 2020 184(3) 1424-1437 <i>OsHOX1</i> and <i>OsHOX28</i> Redundantly Shape Rice tiller angle by Reducing <i>HSFA2D</i> Expression and Auxin Content.
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Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008 66(1-2) 87-103 A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
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| TextPresso Search | Search textpresso for HOX28 ( Recent references may be retrievable, but without any warranty ) |
| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
regulation of auxin biosynthetic process( GO:0010600 )
auxin homeostasis( GO:0010252 ) negative regulation of transcription, DNA-dependent( GO:0045892 ) negative gravitropism( GO:0009959 ) response to deep water( GO:0030912 ) transcription( GO:0006350 ) nucleus( GO:0005634 ) sequence-specific DNA binding( GO:0043565 ) transcription factor activity( GO:0003700 ) regulation of transcription, DNA-dependent( GO:0006355 ) |
| Trait Ontology |
submergence tolerance( TO:0000524 )
auxin content( TO:0002672 ) tiller angle( TO:0000567 ) gravity response trait( TO:0002693 ) |
| Plant Ontology | - |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Dec 28, 2021 | |
