Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | CTB5 |
| Gene Symbol Synonym | HOX14, OsHox14, OsCTB5 |
| CGSNL Gene Name | COLD TOLERANCE AT THE BOOTING STAGE 5 |
| Gene Name Synonym | rice homeobox gene 14, Homeobox-leucine zipper protein HOX14, Homeodomain transcription factor HOX14, HD-ZIP protein HOX14, Cold Tolerance at the Booting stage 5 |
| Protein Name | HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX14 |
| Allele | oshox14, CTB5KM, CTB5Tow |
| Chromosome No. | 7 |
| Explanation | EF555535, AY559047. A2YN17(indica), Q7XI85(japonica). TO:0000847: panicle inflorescence morphology trait. PO:0030123: panicle inflorescence. GO:2000377: regulation of reactive oxygen species metabolic process. |
| Trait Class |
Reproductive organ - panicle
Tolerance and resistance - Stress tolerance Reproductive organ - Panicle, Mode of branching Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK121889
|
| MSU ID |
LOC_Os07g39320.1
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| RAP ID |
Os07g0581700 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Guo H., Gao S., Li H., Yang J., Li J., Gu Y., Lou Q., Su R., Ye W., Zou A., Wang Y., Sun X., Zhang Z., Zhang H., Zeng Y., Yuan P., Peng Y., Li Z., Li J.
Nat Commun 2025 16(1) 1032 Natural variation of CTB5 confers cold adaptation in plateau japonica rice.
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Beretta V.M., Franchini E., Ud Din I., Lacchini E., Van den Broeck L., Sozzani R., Orozco-Arroyo G., Caporali E., Adam H., Jouannic S., Gregis V., Kater M.M.
Plant J. 2023 115(2) 351-368 The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.
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Gonin M., Jeong K., Coudert Y., Lavarenne J., Giang Thi Hoang, Bes M., Huong Thi Mai To, Marie-Rose Ndella Thiaw, Toan Van Do, Moukouanga D., Soazig Guyomarc'h, Bellande K., Jean-Rémy Brossier, Parizot B., Hieu Trang Nguyen, Beeckman T., Véronique Bergougnoux, Rouster J., Sallaud C., Laplaze L., Champion A., Gantet P.
Plant J. 2022 111(2) 546-566 CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice.
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Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008 66(1-2) 87-103 A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
nucleus( GO:0005634 )
sequence-specific DNA binding( GO:0043565 ) transcription factor activity( GO:0003700 ) regulation of transcription, DNA-dependent( GO:0006355 ) transcription( GO:0006350 ) regulation of abscisic acid mediated signaling( GO:0009787 ) response to abscisic acid stimulus( GO:0009737 ) abscisic acid mediated signaling( GO:0009738 ) tapetal layer development( GO:0048658 ) gibberellin metabolic process( GO:0009685 ) positive regulation of gibberellic acid mediated signaling( GO:0009939 ) gibberellic acid mediated signaling( GO:0009740 ) response to gibberellin stimulus( GO:0009739 ) cold acclimation( GO:0009631 ) response to cold( GO:0009409 ) |
| Trait Ontology |
inflorescence branching( TO:0000050 )
primary branch number( TO:0000547 ) spikelet number( TO:0000456 ) cold tolerance( TO:0000303 ) gibberellic acid content( TO:0002675 ) gibberellic acid sensitivity( TO:0000166 ) pollen fertility( TO:0000421 ) abscisic acid sensitivity( TO:0000615 ) hydrogen peroxide content( TO:0000605 ) days to heading( TO:0000137 ) panicle exsertion( TO:0000165 ) filled grain number( TO:0000447 ) grain yield per plant( TO:0000449 ) relative plant height( TO:0001034 ) |
| Plant Ontology |
inflorescence meristem( PO:0000230 )
inflorescence branch meristem( PO:0009105 ) spikelet meristem( PO:0006327 ) flower meristem( PO:0000229 ) inflorescence( PO:0009049 ) root( PO:0009005 ) leaf sheath( PO:0020104 ) leaf( PO:0025034 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jun 17, 2025 | |
