Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | HOX13 |
| Gene Symbol Synonym | Oshox13, OsHox13, OsHDZ11, OsHDZIP11, HDZ11, HDZIP11 |
| CGSNL Gene Name | HOMEOBOX GENE 13 |
| Gene Name Synonym | rice homeobox gene 13, Homeobox-leucine zipper protein HOX13, Homeodomain transcription factor HOX13, HD-ZIP protein HOX13, homeodomain-leucine zipper transcription factor 11, OsHDZIP transcription factor 11 |
| Protein Name | HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX13 |
| Allele | |
| Chromosome No. | 3 |
| Explanation | EF555534. A2XDD6(indica), Q10QP3(japonica). PO:0030123: panicle inflorescence. GO:1901698: response to nitrogen compound. |
| Trait Class |
Tolerance and resistance - Stress tolerance
Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK105644
|
| MSU ID |
LOC_Os03g08960.1
|
| RAP ID |
Os03g0188900 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022 9(8) The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
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Shanks C.M., Huang J., Cheng C.Y., Shih H.S., Brooks M.D., Alvarez J.M., Araus V., Swift J., Henry A., Coruzzi G.M.
Front Plant Sci 2022 13 1006044 Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice.
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Mohanty B.
Front Genet 2021 12 639654 Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
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Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008 66(1-2) 87-103 A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
nitrogen utilization( GO:0019740 )
response to water deprivation( GO:0009414 ) response to jasmonic acid stimulus( GO:0009753 ) response to salt stress( GO:0009651 ) transcription( GO:0006350 ) regulation of transcription, DNA-dependent( GO:0006355 ) response to deep water( GO:0030912 ) plastid( GO:0009536 ) nucleus( GO:0005634 ) sequence-specific DNA binding( GO:0043565 ) transcription factor activity( GO:0003700 ) |
| Trait Ontology |
submergence tolerance( TO:0000524 )
salt tolerance( TO:0006001 ) jasmonic acid sensitivity( TO:0000172 ) drought tolerance( TO:0000276 ) nitrogen sensitivity( TO:0000011 ) relative yield( TO:0000153 ) |
| Plant Ontology |
root( PO:0009005 )
stem( PO:0009047 ) leaf( PO:0025034 ) inflorescence( PO:0009049 ) carpel( PO:0009030 ) plant embryo( PO:0009009 ) |
| Related Strains | |
| - | |
| Phenotype images | |
| - | |
| Last updated | |
| Jun 26, 2023 | |
