Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol HOX13
Gene Symbol Synonym Oshox13, OsHox13, OsHDZ11, OsHDZIP11, HDZ11, HDZIP11
CGSNL Gene Name HOMEOBOX GENE 13
Gene Name Synonym rice homeobox gene 13, Homeobox-leucine zipper protein HOX13, Homeodomain transcription factor HOX13, HD-ZIP protein HOX13, homeodomain-leucine zipper transcription factor 11, OsHDZIP transcription factor 11
Protein Name HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX13
Allele
Chromosome No. 3
Explanation EF555534. A2XDD6(indica), Q10QP3(japonica). PO:0030123: panicle inflorescence. GO:1901698: response to nitrogen compound.
Trait Class Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK105644
MSU ID LOC_Os03g08960.1
RAP ID Os03g0188900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022  9(8) 
The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
Shanks C.M., Huang J., Cheng C.Y., Shih H.S., Brooks M.D., Alvarez J.M., Araus V., Swift J., Henry A., Coruzzi G.M.
Front Plant Sci 2022  13  1006044
Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice.
Mohanty B.
Front Genet 2021  12  639654
Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008  66(1-2)  87-103
A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
TextPresso Search Search textpresso for HOX13 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology nitrogen utilization( GO:0019740 )
response to water deprivation( GO:0009414 )
response to jasmonic acid stimulus( GO:0009753 )
response to salt stress( GO:0009651 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
response to deep water( GO:0030912 )
plastid( GO:0009536 )
nucleus( GO:0005634 )
sequence-specific DNA binding( GO:0043565 )
transcription factor activity( GO:0003700 )
Trait Ontology submergence tolerance( TO:0000524 )
salt tolerance( TO:0006001 )
jasmonic acid sensitivity( TO:0000172 )
drought tolerance( TO:0000276 )
nitrogen sensitivity( TO:0000011 )
relative yield( TO:0000153 )
Plant Ontology root( PO:0009005 )
stem( PO:0009047 )
leaf( PO:0025034 )
inflorescence( PO:0009049 )
carpel( PO:0009030 )
plant embryo( PO:0009009 )
Related Strains
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Phenotype images
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Last updated
Jun 26, 2023


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