Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol HOX12
Gene Symbol Synonym Oshox12, OsHox12
CGSNL Gene Name HOMEOBOX GENE 12
Gene Name Synonym rice homeobox gene 12, Homeobox-leucine zipper protein HOX12, Homeodomain transcription factor HOX12, HD-ZIP protein HOX12
Protein Name HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX12
Allele
Chromosome No. 3
Explanation EF555533. A2XDK5(indica), Q10QF2(japonica). GO:0099402: plant organ development.
Trait Class Reproductive organ - panicle
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Other
Expression
Sequence/Locus
cDNA Accession No. AK073446
MSU ID LOC_Os03g10210.1
RAP ID Os03g0198600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Naithani S., Mohanty B., Elser J., D'Eustachio P., Jaiswal P.
Plants (Basel) 2023  12(11) 
Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).
Mohanty B.
Front Genet 2021  12  639654
Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
Gao S., Fang J., Xu F., Wang W., Chu C.
Plant Cell 2016  28(3)  680-95
Rice HOX12 Regulates panicle exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008  66(1-2)  87-103
A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
TextPresso Search Search textpresso for HOX12 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to flooding( GO:0009413 )
seed germination( GO:0009845 )
response to deep water( GO:0030912 )
sequence-specific DNA binding( GO:0043565 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
gibberellin metabolic process( GO:0009685 )
gibberellic acid homeostasis( GO:0010336 )
Trait Ontology gibberellic acid content( TO:0002675 )
inflorescence exsertion( TO:0001002 )
submergence tolerance( TO:0000524 )
Plant Ontology inflorescence( PO:0009049 )
0 seed germination stage( PO:0007057 )
coleoptile emergence stage( PO:0007045 )
Related Strains
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Phenotype images
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Last updated
Oct 11, 2023


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