Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol LF1
Gene Symbol Synonym HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9
Gene Name Synonym rice homeobox gene 10, Homeobox-leucine zipper protein HOX10, Homeodomain transcription factor HOX10, HD-ZIP protein HOX10, HOMEODOMAIN CONTAINING PROTEIN 1, Homeodomain transcription factor HOX10, lateral florets 1, homeodomain-leucine zipper transcription factor 9, transcription factor 9
Allele lf1
Chromosome No. 3
Explanation EF555531. A2XBL9 (indica), Q6TAQ6 (japonica). leucin zipper gene family. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:0090708: specification of plant organ axis polarity. PO:0099402: plant organ development. TO:0020106: Indole-3-acetic acid content. PO:0030123: panicle inflorescence. TO:0006064: rolled leaf. TO:1000023: lemma morphology trait.
Trait Class Vegetative organ - Leaf
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. AK102378
MSU ID LOC_Os03g01890.1
RAP ID Os03g0109400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Mahtha S.K., Kumari K., Gaur V., Yadav G.
Comput Struct Biotechnol J 2023  21  3946-3963
Cavity architecture based modulation of ligand binding tunnels in plant START domains.
Yuan Z., Pan J., Chen C., Tang Y., Zhang H., Guo J., Yang X., Chen L., Li C., Zhao K., Wang Q., Yang B., Sun C., Deng X., Wang P.
Int J Mol Sci 2022  23(19) 
<i>DRB2</i> Modulates leaf rolling by Regulating Accumulation of MicroRNAs Related to Leaf Development in Rice.
Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022  9(8) 
The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
Zhang T., You J., Zhang Y., Yao W., Chen W., Duan Q., Xiao W., Ye L., Zhou Y., Sang X., Ling Y., He G., Li Y.
New Phytol. 2021   
lf1 regulates the lateral organs polarity development in rice.
Li Y., Yang Y., Liu Y., Li D., Zhao Y., Li Z., Liu Y., Jiang D., Li J., Zhou H., Chen J., Zhuang C., Liu Z.
Rice (N Y) 2019  12(1)  60
Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.
Zhang T., Li Y., Ma L., Sang X., Ling Y., Wang Y., Yu P., Zhuang H., Huang J., Wang N., Zhao F., Zhang C., Yang Z., Fang L., He G.
Proc. Natl. Acad. Sci. U.S.A. 2017   
LATERAL FLORET 1 induced the three-florets spikelet in rice.
Itoh J,Hibara K,Sato Y,Nagato Y
Plant Physiol. 2008  147  1960-75
Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008  66(1-2)  87-103
A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
Nagasaki H, Itoh J, Hayashi K, Hibara K, Satoh-Nagasawa N, Nosaka M, Mukouhata M, Ashikari M, Kitano H, Matsuoka M, Nagato Y, Sato Y.
Proc. Natl. Acad. Sci. U.S.A. 2007  104(37)  14867-71
The small interfering RNA production pathway is required for shoot meristem initiation in rice.
TextPresso Search Search textpresso for LF1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to jasmonic acid stimulus( GO:0009753 )
leaf development( GO:0048366 )
cell fate specification( GO:0001708 )
adaxial/abaxial pattern formation( GO:0009955 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
sequence-specific DNA binding( GO:0043565 )
regulation of transcription, DNA-dependent( GO:0006355 )
floral meristem determinacy( GO:0010582 )
flower development( GO:0009908 )
Trait Ontology spikelet anatomy and morphology trait( TO:0000657 )
auxin content( TO:0002672 )
leaf width( TO:0000370 )
leaf development trait( TO:0000655 )
lemma shape( TO:0000614 )
jasmonic acid sensitivity( TO:0000172 )
Plant Ontology root( PO:0009005 )
stem( PO:0009047 )
leaf( PO:0025034 )
leaf sheath( PO:0020104 )
inflorescence( PO:0009049 )
vascular leaf primordium( PO:0000017 )
shoot apical meristem( PO:0020148 )
bundle sheath extension( PO:0006022 )
lemma( PO:0009037 )
leaf development stage( PO:0001050 )
xylem( PO:0005352 )
Related Strains
Phenotype images
Last updated
Nov 29, 2023