Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol LF1
Gene Symbol Synonym HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1
Gene Name Synonym rice homeobox gene 10, Homeobox-leucine zipper protein HOX10, Homeodomain transcription factor HOX10, HD-ZIP protein HOX10, HOMEODOMAIN CONTAINING PROTEIN 1, Homeodomain transcription factor HOX10, lateral florets 1
Allele lf1
Chromosome No. 3
Explanation EF555531. A2XBL9 (indica), Q6TAQ6 (japonica). leucin zipper gene family. GO:0090708: specification of plant organ axis polarity. PO:0099402: plant organ development. TO:0020106: Indole-3-acetic acid content. PO:0030123: panicle inflorescence. TO:0006064: rolled leaf. TO:1000023: lemma morphology trait.
Trait Class Vegetative organ - Leaf
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. AK102378
MSU ID LOC_Os03g01890.1
RAP ID Os03g0109400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Zhang T., You J., Zhang Y., Yao W., Chen W., Duan Q., Xiao W., Ye L., Zhou Y., Sang X., Ling Y., He G., Li Y.
New Phytol. 2021   
lf1 regulates the lateral organs polarity development in rice.
Li Y., Yang Y., Liu Y., Li D., Zhao Y., Li Z., Liu Y., Jiang D., Li J., Zhou H., Chen J., Zhuang C., Liu Z.
Rice (N Y) 2019  12(1)  60
Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.
Zhang T., Li Y., Ma L., Sang X., Ling Y., Wang Y., Yu P., Zhuang H., Huang J., Wang N., Zhao F., Zhang C., Yang Z., Fang L., He G.
Proc. Natl. Acad. Sci. U.S.A. 2017   
LATERAL FLORET 1 induced the three-florets spikelet in rice.
Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008  66(1-2)  87-103
A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
Itoh J,Hibara K,Sato Y,Nagato Y
Plant Physiol. 2008  147  1960-75
Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
Nagasaki H, Itoh J, Hayashi K, Hibara K, Satoh-Nagasawa N, Nosaka M, Mukouhata M, Ashikari M, Kitano H, Matsuoka M, Nagato Y, Sato Y.
Proc. Natl. Acad. Sci. U.S.A. 2007  104(37)  14867-71
The small interfering RNA production pathway is required for shoot meristem initiation in rice.
TextPresso Search Search textpresso for LF1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology leaf development( GO:0048366 )
cell fate specification( GO:0001708 )
adaxial/abaxial pattern formation( GO:0009955 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
sequence-specific DNA binding( GO:0043565 )
regulation of transcription, DNA-dependent( GO:0006355 )
floral meristem determinacy( GO:0010582 )
flower development( GO:0009908 )
Trait Ontology spikelet anatomy and morphology trait( TO:0000657 )
auxin content( TO:0002672 )
leaf width( TO:0000370 )
leaf development trait( TO:0000655 )
lemma shape( TO:0000614 )
Plant Ontology root( PO:0009005 )
stem( PO:0009047 )
leaf( PO:0025034 )
leaf sheath( PO:0020104 )
inflorescence( PO:0009049 )
vascular leaf primordium( PO:0000017 )
shoot apical meristem( PO:0020148 )
bundle sheath extension( PO:0006022 )
xylem( PO:0005352 )
lemma( PO:0009037 )
leaf development stage( PO:0001050 )
Related Strains
Phenotype images
Last updated
Jan 13, 2022