Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol YSL15
Gene Symbol Synonym OsYSL15, OsYs7
CGSNL Gene Name YELLOW STRIP-LIKE GENE 15
Gene Name Synonym rice YSL (yellow stripe-like) gene 15, Iron-phytosiderophore transporter YSL15, Protein YELLOW STRIPE LIKE 15, ferric Fe-DMA transporter OsYSL15, yellow stripe 1-like transporter 15
Protein Name IRON-PHYTOSIDEROPHORE TRANSPORTER YSL15
Allele
Chromosome No. 2
Explanation IRON-REGULATED IRON(III)-DEOXYMUGINEIC ACID TRANSPORTER. Q6H3Z3. AB190923. D24682. AU031880, AU082716, AU184448, AU032408, D24664. TO:0006049: iron concentration. TO:0006053: zinc concentration. TO:0020090: zinc content trait. GO:1990641: response to iron ion starvation.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK063464
MSU ID LOC_Os02g43410.1
LOC_Os02g43410.2
RAP ID Os02g0650300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Xiong X., Zeng J., Ning Q., Liu H., Bu Z., Zhang X., Zeng J., Zhuo R., Cui K., Qin Z., Gao Y., Liu X., Zhu Y.
Nat Commun 2024  15(1)  5012
Ferroptosis induction in host rice by endophyte OsiSh-2 is necessary for mutualism and disease resistance in symbiosis.
Zhao J., Meng X., Zhang Z., Wang M., Nie F., Liu Q.
Int J Mol Sci 2023  24(9) 
<i>OsLPR5</i> Encoding Ferroxidase Positively Regulates the Tolerance to Salt Stress in Rice.
Regon P., Dey S., Rehman M., Pradhan A.K., Chowra U., Tanti B., Talukdar A.D., Panda S.K.
Front Plant Sci 2022  13  798580
Transcriptomic Analysis Revealed Reactive Oxygen Species Scavenging Mechanisms Associated With Ferrous Iron Toxicity in Aromatic Keteki Joha Rice.
Wang W., Shinwari K.I., Zhang H., Zhang H., Dong L., He F., Zheng L.
Int J Mol Sci 2022  23(23) 
The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.
Cao L., Gao Y., Yu J., Niu S., Zeng J., Yao Q., Wang X., Bu Z., Xu T., Liu X., Zhu Y.
Plant Physiol. Biochem. 2021  158  275-283
Streptomyces hygroscopicus OsiSh-2-induced mitigation of Fe deficiency in rice plants.
Liu J., Zhan J., Chen J., Lu X., Zhi S., Ye G.
Front Genet 2021  12  701658
Validation of Genes Affecting Rice Grain Zinc Content Through Candidate Gene-Based Association Analysis.
Wang S., Li L., Ying Y., Wang J., Shao J.F., Yamaji N., Whelan J., Ma J.F., Shou H.
New Phytol. 2020  225(3)  1247-1260
A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localising IRO2 to the nucleus in rice.
Liang G., Zhang H., Li Y., Pu M., Yang Y., Li C., Lu C., Xu P., Yu D.
J Integr Plant Biol 2020  62(5)  668-689
Oryza sativa FER-LIKE FE DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (OsFIT/OsbHLH156) interacts with OsIRO2 to regulate iron homeostasis.
Kobayashi T., Ozu A., Kobayashi S., An G., Jeon J.S., Nishizawa N.K.
Plant Mol. Biol. 2019  101(4-5)  471-486
OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.
Che J., Yokosho K., Yamaji N., Jian Feng Ma
Plant Physiol. 2019  181(1)  276-288
A Vacuolar Phytosiderophore Transporter Alters Iron and Zinc Accumulation in Polished Rice Grains.
Aung M.S., Kobayashi T., Masuda H., Nishizawa N.K.
Physiol Plant 2018   
Rice HRZ ubiquitin ligases are crucial for response to excess iron.
Wang B., Wei H., Xue Z., Zhang W.H.
Ann. Bot. 2017  119(6)  945-956
Gibberellins regulate iron deficiency-response by influencing iron transport and translocation in rice seedlings (Oryza sativa).
Zhang H., Li Y., Yao X., Liang G., Yu D.
Plant Physiol. 2017  175(1)  543-554
POSITIVE REGULATOR OF IRON HOMEOSTASIS1, OsPRI1, Facilitates Iron Homeostasis.
Masuda H., Shimochi E., Hamada T., Senoura T., Kobayashi T., Aung M.S., Ishimaru Y., Ogo Y., Nakanishi H., Nishizawa N.K.
PLoS ONE 2017  12(3)  e0173441
A new transgenic rice line exhibiting enhanced ferric iron reduction and phytosiderophore production confers tolerance to low iron availability in calcareous soil.
Senoura T., Sakashita E., Kobayashi T., Takahashi M., Aung M.S., Masuda H., Nakanishi H., Nishizawa N.K.
Plant Mol. Biol. 2017  95(4-5)  375-387
The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.
Tan S., Liu F., Pan X.X., Zang Y.P., Jin F., Zu W.X., Qi X.T., Xiao W., Yin L.P.
Sci Rep 2016  6  25485
CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.
Sebastian A., Prasad M.N.
Protoplasma 2015   
Operative photo assimilation associated proteome modulations are critical for iron-dependent cadmium tolerance in Oryza sativa L.
Bashir K., Ishimaru Y., Itai R.N., Senoura T., Takahashi M., An G., Oikawa T., Ueda M., Sato A., Uozumi N., Nakanishi H., Nishizawa N.K.
Plant Mol. Biol. 2015  88(1-2)  165-76
Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.
Agarwal S., Tripura Venkata VG., Kotla A., Mangrauthia S.K., Neelamraju S.
Gene 2014  546(2)  430-6
Expression patterns of QTL based and other candidate genes in Madhukar × Swarna RILs with contrasting levels of iron and zinc in unpolished rice grains.
Kobayashi T.a b, Nakanishi Itai R.c, Nishizawa N.K.b
Rice 2014  7 
Iron deficiency responses in rice roots
Yang A., Li Y., Xu Y., Zhang W.H.
J. Exp. Bot. 2013  64(16)  5009-20
A receptor-like protein RMC is involved in regulation of iron acquisition in rice.
Ishimaru Y., Takahashi R., Bashir K., Shimo H., Senoura T., Sugimoto K., Ono K., Yano M., Ishikawa S., Arao T., Nakanishi H., Nishizawa N.K.
Sci Rep 2012  2  286
Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport.
Kakei Y., Ishimaru Y., Kobayashi T., Yamakawa T., Nakanishi H., Nishizawa N.K.
Plant Mol. Biol. 2012  79(6)  583-94
OsYSL16 plays a role in the allocation of iron.
Zheng L., Yamaji N., Yokosho K., Ma J.F.
Plant Cell 2012  24(9)  3767-82
YSL16 is a phloem-localized transporter of the copper-nicotianamine complex that is responsible for copper distribution in rice.
Liu T., Zeng J., Xia K., Fan T., Li Y., Wang Y., Xu X., Zhang M.
Rice (N Y) 2012  5  12
Evolutionary expansion and functional diversification of oligopeptide transporter gene family in rice
Lee S., Kim Y.S., Jeon U.S., Kim Y.K., Schjoerring J.K., An G.
Mol. Cells 2012  33(3)  269-75
Activation of Rice nicotianamine synthase 2 (OsNAS2) enhances iron availability for biofortification.
Kobayashi T., Naoko K Nishizawa
Annu Rev Plant Biol 2012  63  131-52
Iron uptake, translocation, and regulation in higher plants.
Lee S., Ryoo N., Jeon J.S., Guerinot M.L., An G.
Mol. Cells 2012  33(2)  117-26
Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency.
Wang L., Ying Y., Narsai R., Ye L., Zheng L., Tian J., Whelan J., Shou H.
Plant Cell Environ. 2012  36(1)  224-36.
Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa.
Takanashi H., Ishimaru Y., Bashir K., Fujimoto M., Shimo H., An G., Nagasaka S., Nishizawa N.K., Nakanishi H., Tsutsumi N.
Nature Communications 2011  2  322
The rice mitochondrial iron transporter is essential for plant growth
Ishimaru Y., Masuda H., Bashir K., Inoue H., Tsukamoto T., Takahashi M., Nakanishi H., Aoki N., Hirose T., Ohsugi R., Naoko K Nishizawa
Plant J. 2010  62(3)  379-90
Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese.
Lee S,Chiecko JC,Kim SA,Walker EL,Lee Y,Guerinot ML,An G
Plant Physiol. 2009  150  786-800
Disruption of OsYSL15 leads to iron inefficiency in rice plants.
Kobayashi T,Itai RN,Ogo Y,Kakei Y,Nakanishi H,Takahashi M,Nishizawa NK
Plant J. 2009  60(6)  948-61
The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes.
Aoyama T,Kobayashi T,Takahashi M,Nagasaka S,Usuda K,Kakei Y,Ishimaru Y,Nakanishi H,Mori S,Nishizawa NK
Plant Mol. Biol. 2009  70  681-92
OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints.
Inoue H, Kobayashi T, Nozoye T, Takahashi M, Kakei Y, Suzuki K, Nakazono M, Nakanishi H, Mori S, Nishizawa NK.
J. Biol. Chem. 2009  284(6)  3470-9.
Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings.
Suzuki,M., Takahashi,M., Tsukamoto,T., Watanabe,S., Matsuhashi,S., Yazaki,J., Kishimoto,N., Kikuchi,S., Nakanishi,H., Mori,S. and Nishizawa,N.K.
Plant J. 2006  48(1)  85-97
Biosynthesis and secretion of mugineic acid family phytosiderophores in zinc-deficient barley
Kobayashi,T., Suzuki,M., Inoue,H., Itai,R.N., Takahashi,M., Nakanishi,H., Mori,S. and Nishizawa,N.K.
J. Exp. Bot. 2005  56  1305-1316
Expression of iron-acquisition-related genes in iron-deficient rice is co-ordinately induced by partially conserved iron-deficiency-responsive elements
Koike, S., H. Inoue, D. Mizuno, M. Takahashi, M. Nakanishi, S. Mori and N.K. Nishizawa
Plant J. 2004  39 (3)  415-424
OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem.
Gross,J., Stein,J.R., Fett-Neto,A.G. and Fett,J.P.
Genet. Mol. Biol. 2003  26(4)  477-497
Iron homeostasis related genes in rice
TextPresso Search Search textpresso for YSL15 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to iron(II) ion( GO:0010040 )
iron ion binding( GO:0005506 )
response to symbiotic bacterium( GO:0009609 )
response to starvation( GO:0042594 )
integral to membrane( GO:0016021 )
transmembrane transport( GO:0055085 )
iron ion transport( GO:0006826 )
plasma membrane( GO:0005886 )
cellular response to iron ion starvation( GO:0010106 )
cellular response to zinc ion starvation( GO:0034224 )
carboxylic acid transport( GO:0046942 )
amino acid transport( GO:0006865 )
response to gibberellin stimulus( GO:0009739 )
response to iron ion( GO:0010039 )
Trait Ontology iron sensitivity( TO:0000224 )
zinc sensitivity( TO:0000351 )
gibberellic acid sensitivity( TO:0000166 )
Plant Ontology root( PO:0009005 )
Related Strains
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Phenotype images
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Last updated
Sep 24, 2024


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