Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol RDR4
Gene Symbol Synonym OsRDR4, OsRDR3b
CGSNL Gene Name RNA-DEPENDENT RNA POLYMERASE 4
Gene Name Synonym RNA-dependent RNA polymerase 4, Probable RNA-dependent RNA polymerase 4
Protein Name RNA-DEPENDENT RNA POLYMERASE 4
Allele
Chromosome No. 1
Explanation EC=2.7.7.48 Q5QMN4. O. sativa cv Kitaake protein (transcript ID): OsKRDR4a (OsKitaake01g069900.2), OsKRDR4b (OsKitaake01g069900.1). OsRDR3b in Zong et al. 2009 and Jiang et al. 2011.
Trait Class Biochemical character
Expression
Sequence/Locus
cDNA Accession No. AK064209
MSU ID LOC_Os01g10140.2
LOC_Os01g10140.3
RAP ID Os01g0198000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Naim M.D., Alamin M., Mosharof M.P., Imtiaj A., Haque Mollah MN.
Heliyon 2024  10(22)  e40395
Major components of RNAi gene families in <i>Oryza sativa</i> cultivar <i>Kitaake</i>: <i>In-silico</i> discovery and characterization.
Jiang L., Qian D., Zheng H., Meng L.Y., Chen J., Le W.J., Zhou T., Zhou Y.J., Wei C.H., Li Y.
Virus Res. 2012  163(2)  512-9
RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus.
Urayama S,Moriyama H,Aoki N,Nakazawa Y,Okada R,Kiyota E,Miki D,Shimamoto K,Fukuhara T
Plant Cell Physiol. 2010  51(1)  58-67
Knock-down of OsDCL2 in Rice Negatively Affects Maintenance of the Endogenous dsRNA Virus, Oryza sativa Endornavirus.
Zong J., Yao X., Yin J., Zhang D., Ma H.
Gene 2009  447(1)  29-39
Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups.
Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, Kapoor S.
BMC Genomics. 2008  9  451
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology RNA binding( GO:0003723 )
gene silencing by RNA( GO:0031047 )
RNA-directed RNA polymerase activity( GO:0003968 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jul 10, 2025

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