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Basic Information
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CGSNL Gene Symbol
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LSI6
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Gene Symbol Synonym
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Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2
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CGSNL Gene Name
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LOW SILICON RICE 6
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Gene Name Synonym
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Low silicon rice 6, Aquaporin NIP2-2, NOD26-like intrinsic protein 2-2
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Protein Name
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NOD26-LIKE MEMBRANE INTEGRAL PROTEIN
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Allele
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lsi6 A-2, lsi6 B-29
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Chromosome No.
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6
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Explanation
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AB253627, AC003569, Q67WJ8. a passive Si channel (Lsi1-like) gene. GO:1901684: arsenate ion transmembrane transport. TO:0006054: arsenic content trait.
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Trait Class
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Seed - Physiological traits - Storage substances
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK072966
AK112022
AK104037
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MSU ID
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LOC_Os06g12310.1
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RAP ID
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Os06g0228200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Huang S., Yamaji N., Konishi N., Mitani-Ueno N., Ma J.F.
New Phytol. 2025 247(3) 1280-1289
Symplastic and apoplastic pathways for local distribution of silicon in rice leaves.
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Ma C., Hao Y., Zhao J., Zuverza-Mena N., Meselhy A.G., Dhankher O.P., Rui Y., White J.C., Xing B.
Nanomaterials (Basel) 2021 11(4)
Graphitic Carbon Nitride (C3N4) Reduces Cadmium and Arsenic Phytotoxicity and Accumulation in Rice (<i>Oryza sativa</i> L.).
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Pan D., Yi J., Li F., Li X., Liu C., Wu W., Tao T.
BMC Plant Biol. 2020 20(1) 133
Dynamics of gene expression associated with arsenic uptake and transport in rice during the whole growth period.
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Réthoré E., Ali N., Yvin J.C., Hosseini S.A.
Int J Mol Sci 2020 21(10)
Silicon Regulates Source to Sink Metabolic Homeostasis and Promotes Growth of Rice Plants Under Sulfur Deficiency.
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Wang F.Z., Chen M.X., Yu L.J., Xie L.J., Yuan L.B., Qi H., Xiao M., Guo W., Chen Z., Yi K., Zhang J., Qiu R., Shu W., Xiao S., Chen Q.F.
Front Plant Sci 2017 8 1868
OsARM1, an R2R3 MYB transcription factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.
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Chen Y., Han Y.H., Cao Y., Zhu Y.G., Rathinasabapathi B., Ma L.Q.
Front Plant Sci 2017 8 268
Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice.
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Cao H., Zhuo L., Su Y., Sun L., Wang X.
Plant J. 2016
Non-specific phospholipase C1 affects silicon distribution and mechanical strength in stem nodes of rice.
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Yamaji N., Sakurai G., Mitani-Ueno N., Ma J.F.
Proc. Natl. Acad. Sci. U.S.A. 2015
Orchestration of three transporters and distinct vascular structures in node for intervascular transfer of silicon in rice.
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Denancé N., Szurek B., Noël LD.
Plant Cell Physiol. 2014 55(3) 469-74
Emerging functions of nodulin-like proteins in non-nodulating plant species.
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Ye M., Song Y., Long J., Wang R., Baerson S.R., Pan Z., Zhu-Salzman K., Xie J., Cai K., Luo S., Zeng R.
Proc. Natl. Acad. Sci. U.S.A. 2013 110(38) E3631-9
Priming of jasmonate-mediated antiherbivore defense responses in rice by silicon.
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Zhang Y.X., Liu J.G., Chai T.Y., Jin L.
Progress in Biochemistry and Biophysics 2011 38 400-407
Advances in the uptake and translocation of silicon in plants
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Yamaji N,Ma JF
Plant Cell 2009 21(9) 2878-83
A transporter at the node responsible for intervascular transfer of silicon in rice.
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Yamaji,N., Mitatni,N. and Ma,J.F.
Plant Cell 2008 20(5) 1381-1389
A transporter regulating silicon distribution in rice shoots
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Bienert GP,Thorsen M,Schussler MD,Nilsson HR,Wagner A,Tamas MJ,Jahn TP
BMC Biol. 2008 6 26
A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across membranes.
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Mitani N,Yamaji N,Ma JF
Pflugers Arch 2008 456 679-86
Characterization of substrate specificity of a rice silicon transporter, Lsi1.
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Kerrie L. Forrest, Bhave M.
Funct. Integr. Genomics 2007 7 263-289
Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype
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Sakurai J, Ishikawa F, Yamaguchi T, Uemura M, Maeshima M
Plant Cell Physiol. 2005 46(9) 1568-77
Identification of 33 rice aquaporin genes and analysis of their expression and function
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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metal ion transmembrane transporter activity( GO:0046873 )
metal ion transport( GO:0030001 )
vascular transport( GO:0010232 )
response to starvation( GO:0042594 )
response to inorganic substance( GO:0010035 )
transporter activity( GO:0005215 )
membrane( GO:0016020 )
integral to membrane( GO:0016021 )
silicon efflux transmembrane transporter activity( GO:0032523 )
silicic acid transport( GO:0051207 )
transmembrane transport( GO:0055085 )
antimonite transmembrane transporter activity( GO:0015104 )
response to arsenic( GO:0046685 )
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Trait Ontology
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silicon sensitivity( TO:0000031 )
sulfur sensitivity( TO:0000007 )
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Plant Ontology
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stem node( PO:0020141 )
xylem( PO:0005352 )
parenchyma cell( PO:0000074 )
vascular bundle( PO:0005020 )
leaf lamina vein( PO:0020138 )
phyllome lamina vein( PO:0025348 )
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Related Strains
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Phenotype images
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Last updated
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Sep 11, 2025
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Update info.