Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol LSI6
Gene Symbol Synonym Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2
Gene Name Synonym Low silicon rice 6, Aquaporin NIP2-2, NOD26-like intrinsic protein 2-2
Chromosome No. 6
Explanation AB253627, AC003569, Q67WJ8. a passive Si channel (Lsi1-like) gene. GO:1901684: arsenate ion transmembrane transport. TO:0006054: arsenic content trait.
Trait Class Seed - Physiological traits - Storage substances
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK072966
MSU ID LOC_Os06g12310.1
RAP ID Os06g0228200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Ma C., Hao Y., Zhao J., Zuverza-Mena N., Meselhy A.G., Dhankher O.P., Rui Y., White J.C., Xing B.
Nanomaterials (Basel) 2021  11(4) 
Graphitic Carbon Nitride (C3N4) Reduces Cadmium and Arsenic Phytotoxicity and Accumulation in Rice (<i>Oryza sativa</i> L.).
Réthoré E., Ali N., Yvin J.C., Hosseini S.A.
Int J Mol Sci 2020  21(10) 
Silicon Regulates Source to Sink Metabolic Homeostasis and Promotes Growth of Rice Plants Under Sulfur Deficiency.
Pan D., Yi J., Li F., Li X., Liu C., Wu W., Tao T.
BMC Plant Biol. 2020  20(1)  133
Dynamics of gene expression associated with arsenic uptake and transport in rice during the whole growth period.
Wang F.Z., Chen M.X., Yu L.J., Xie L.J., Yuan L.B., Qi H., Xiao M., Guo W., Chen Z., Yi K., Zhang J., Qiu R., Shu W., Xiao S., Chen Q.F.
Front Plant Sci 2017  8  1868
OsARM1, an R2R3 MYB transcription factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.
Chen Y., Han Y.H., Cao Y., Zhu Y.G., Rathinasabapathi B., Ma L.Q.
Front Plant Sci 2017  8  268
Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice.
Cao H., Zhuo L., Su Y., Sun L., Wang X.
Plant J. 2016   
Non-specific phospholipase C1 affects silicon distribution and mechanical strength in stem nodes of rice.
Yamaji N., Sakurai G., Mitani-Ueno N., Ma J.F.
Proc. Natl. Acad. Sci. U.S.A. 2015   
Orchestration of three transporters and distinct vascular structures in node for intervascular transfer of silicon in rice.
Denancé N., Szurek B., Noël LD.
Plant Cell Physiol. 2014  55(3)  469-74
Emerging functions of nodulin-like proteins in non-nodulating plant species.
Ye M., Song Y., Long J., Wang R., Baerson S.R., Pan Z., Zhu-Salzman K., Xie J., Cai K., Luo S., Zeng R.
Proc. Natl. Acad. Sci. U.S.A. 2013  110(38)  E3631-9
Priming of jasmonate-mediated antiherbivore defense responses in rice by silicon.
Zhang Y.X., Liu J.G., Chai T.Y., Jin L.
Progress in Biochemistry and Biophysics 2011  38  400-407
Advances in the uptake and translocation of silicon in plants
Yamaji N,Ma JF
Plant Cell 2009  21(9)  2878-83
A transporter at the node responsible for intervascular transfer of silicon in rice.
Yamaji,N., Mitatni,N. and Ma,J.F.
Plant Cell 2008  20(5)  1381-1389
A transporter regulating silicon distribution in rice shoots
Bienert GP,Thorsen M,Schussler MD,Nilsson HR,Wagner A,Tamas MJ,Jahn TP
BMC Biol. 2008  6  26
A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across membranes.
Mitani N,Yamaji N,Ma JF
Pflugers Arch 2008  456  679-86
Characterization of substrate specificity of a rice silicon transporter, Lsi1.
Kerrie L. Forrest, Bhave M.
Funct. Integr. Genomics 2007  7  263-289
Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype
Sakurai J, Ishikawa F, Yamaguchi T, Uemura M, Maeshima M
Plant Cell Physiol. 2005  46(9)  1568-77
Identification of 33 rice aquaporin genes and analysis of their expression and function
TextPresso Search Search textpresso for LSI6 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to starvation( GO:0042594 )
response to inorganic substance( GO:0010035 )
transporter activity( GO:0005215 )
membrane( GO:0016020 )
integral to membrane( GO:0016021 )
silicon efflux transmembrane transporter activity( GO:0032523 )
silicic acid transport( GO:0051207 )
transmembrane transport( GO:0055085 )
antimonite transmembrane transporter activity( GO:0015104 )
response to arsenic( GO:0046685 )
Trait Ontology silicon sensitivity( TO:0000031 )
sulfur sensitivity( TO:0000007 )
Plant Ontology stem node( PO:0020141 )
Related Strains
Phenotype images
Last updated
Oct 15, 2021