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Basic Information
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CGSNL Gene Symbol
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DCL3A
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Gene Symbol Synonym
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OsDCL3a
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CGSNL Gene Name
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DICER-LIKE 3A
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Gene Name Synonym
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Endoribonuclease Dicer homolog 3a, Dicer-like protein 3a
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Protein Name
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DICER-LIKE PROTEIN 3A
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Allele
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dcl3a
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Chromosome No.
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1
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Explanation
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EC=3.1.26.- Q5N870. SRA under accession number PRJNA856866 (BioProject: nematode-induced intergenerational resistance in wild-type and dcl3a rice). GO:0080188: gene silencing by siRNA-directed DNA methylation.
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Trait Class
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Biochemical character
Vegetative organ - Leaf
Vegetative organ - Culm
Reproductive organ - Inflorescence
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK120075
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MSU ID
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LOC_Os01g68120.1
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RAP ID
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Os01g0909200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Meijer A., Atighi M.R., Demeestere K., De Meyer T., Vandepoele K., Kyndt T.
Plant Physiol. 2023
Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses.
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Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.
Plant Sci. 2015 237 24-32
Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
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Wei L.a b, Gu L.a, Song X.a, Cui X.a b, Lu Z.a, Zhou M.a, Wang L.a, Hu F.c, Zhai J.d e, Meyers B.C.d e, Cao X.a
Proc. Natl. Acad. Sci. U.S.A. 2014 111 3877-3882
Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice
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Song X., Li P., Zhai J., Zhou M., Ma L., Liu B., Jeong D.H., Nakano M., Cao S., Liu C., Chu C., Wang X.J., Green P.J., Meyers B.C., Cao X.
Plant J. 2012 69(3) 462-74
Roles of DCL4 and DCL3b in rice phased small RNA biogenesis.
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Wu L., Zhou H., Zhang Q., Zhang J., Ni F., Liu C., Qi Y.
Mol. Cell 2010 38(3) 465-75
DNA methylation mediated by a microRNA pathway.
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Urayama S,Moriyama H,Aoki N,Nakazawa Y,Okada R,Kiyota E,Miki D,Shimamoto K,Fukuhara T
Plant Cell Physiol. 2010 51(1) 58-67
Knock-down of OsDCL2 in Rice Negatively Affects Maintenance of the Endogenous dsRNA Virus, Oryza sativa Endornavirus.
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Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, Kapoor S.
BMC Genomics. 2008 9 451
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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ethylene mediated signaling pathway( GO:0009873 )
response to ethylene stimulus( GO:0009723 )
jasmonic acid mediated signaling pathway( GO:0009867 )
response to jasmonic acid stimulus( GO:0009753 )
systemic acquired resistance( GO:0009627 )
defense response to nematode( GO:0002215 )
magnesium ion binding( GO:0000287 )
ATP binding( GO:0005524 )
nucleus( GO:0005634 )
RNA processing( GO:0006396 )
manganese ion binding( GO:0030145 )
DNA binding( GO:0003677 )
RNA binding( GO:0003723 )
helicase activity( GO:0004386 )
ribonuclease III activity( GO:0004525 )
gene silencing by RNA( GO:0031047 )
defense response to fungus( GO:0050832 )
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Trait Ontology
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secondary branch number( TO:0000557 )
plant height( TO:0000207 )
flag leaf angle( TO:0000124 )
blast disease( TO:0000074 )
nematode damage resistance( TO:0000384 )
jasmonic acid sensitivity( TO:0000172 )
ethylene sensitivity( TO:0000173 )
abscisic acid content( TO:0002667 )
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Plant Ontology
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-
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Related Strains
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-
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Phenotype images
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Last updated
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Feb 18, 2025
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