Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol DCL3A
Gene Symbol Synonym OsDCL3a
CGSNL Gene Name DICER-LIKE 3A
Gene Name Synonym Endoribonuclease Dicer homolog 3a, Dicer-like protein 3a
Protein Name DICER-LIKE PROTEIN 3A
Allele dcl3a
Chromosome No. 1
Explanation EC=3.1.26.- Q5N870. SRA under accession number PRJNA856866 (BioProject: nematode-induced intergenerational resistance in wild-type and dcl3a rice). GO:0080188: gene silencing by siRNA-directed DNA methylation.
Trait Class Biochemical character
Vegetative organ - Leaf
Vegetative organ - Culm
Reproductive organ - Inflorescence
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Expression
Sequence/Locus
cDNA Accession No. AK120075
MSU ID LOC_Os01g68120.1
RAP ID Os01g0909200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Meijer A., Atighi M.R., Demeestere K., De Meyer T., Vandepoele K., Kyndt T.
Plant Physiol. 2023   
Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses.
Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.
Plant Sci. 2015  237  24-32
Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
Wei L.a b, Gu L.a, Song X.a, Cui X.a b, Lu Z.a, Zhou M.a, Wang L.a, Hu F.c, Zhai J.d e, Meyers B.C.d e, Cao X.a
Proc. Natl. Acad. Sci. U.S.A. 2014  111  3877-3882
Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice
Song X., Li P., Zhai J., Zhou M., Ma L., Liu B., Jeong D.H., Nakano M., Cao S., Liu C., Chu C., Wang X.J., Green P.J., Meyers B.C., Cao X.
Plant J. 2012  69(3)  462-74
Roles of DCL4 and DCL3b in rice phased small RNA biogenesis.
Wu L., Zhou H., Zhang Q., Zhang J., Ni F., Liu C., Qi Y.
Mol. Cell 2010  38(3)  465-75
DNA methylation mediated by a microRNA pathway.
Urayama S,Moriyama H,Aoki N,Nakazawa Y,Okada R,Kiyota E,Miki D,Shimamoto K,Fukuhara T
Plant Cell Physiol. 2010  51(1)  58-67
Knock-down of OsDCL2 in Rice Negatively Affects Maintenance of the Endogenous dsRNA Virus, Oryza sativa Endornavirus.
Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, Kapoor S.
BMC Genomics. 2008  9  451
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology ethylene mediated signaling pathway( GO:0009873 )
response to ethylene stimulus( GO:0009723 )
jasmonic acid mediated signaling pathway( GO:0009867 )
response to jasmonic acid stimulus( GO:0009753 )
systemic acquired resistance( GO:0009627 )
defense response to nematode( GO:0002215 )
magnesium ion binding( GO:0000287 )
ATP binding( GO:0005524 )
nucleus( GO:0005634 )
RNA processing( GO:0006396 )
manganese ion binding( GO:0030145 )
DNA binding( GO:0003677 )
RNA binding( GO:0003723 )
helicase activity( GO:0004386 )
ribonuclease III activity( GO:0004525 )
gene silencing by RNA( GO:0031047 )
defense response to fungus( GO:0050832 )
Trait Ontology secondary branch number( TO:0000557 )
plant height( TO:0000207 )
flag leaf angle( TO:0000124 )
blast disease( TO:0000074 )
nematode damage resistance( TO:0000384 )
jasmonic acid sensitivity( TO:0000172 )
ethylene sensitivity( TO:0000173 )
abscisic acid content( TO:0002667 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Feb 18, 2025


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