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Basic Information
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CGSNL Gene Symbol
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SHL4
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Gene Symbol Synonym
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shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2
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CGSNL Gene Name
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SHOOTLESS 4
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Gene Name Synonym
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shootless 4, shootless-4, Protein argonaute 7, Protein SHOOTLESS 4, Protein SHOOT ORGANIZATION 2, SHOOT ORGANIZATION2, ARGONAUTE 7, Argonaute 7
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Protein Name
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ARGONAUTE 7
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Allele
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shl4-1, shl4-2, sho2
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Chromosome No.
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3
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Explanation
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EF486281. AB353924. Q75HC2. In embryogenesis, shoot apical meristem is not differentiated. Coleoptile and epiblast are lost. Scutellum and radicle are normal. Expression of homeobox gene, OSH1 is normal. Morphology of embryo of the mutant is the same as shl1 or shl2. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. a predicted lethal-phenotype gene in Lloyd et al. 2015. TO:0006064: rolled leaf.
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Trait Class
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Vegetative organ - Shoot apical meristem(SAM)
Vegetative organ - Leaf
Seed - Morphological traits - Embryo
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Expression
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Sequence/Locus
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cDNA Accession No.
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AB353924
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MSU ID
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LOC_Os03g33650.1
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RAP ID
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Os03g0449200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Zhang T., You J., Zhang Y., Yao W., Chen W., Duan Q., Xiao W., Ye L., Zhou Y., Sang X., Ling Y., He G., Li Y.
New Phytol. 2021
lf1 regulates the lateral organs polarity development in rice.
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Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
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Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018 9 1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
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Yang S.Q., Li W.Q., Miao H., Gan P.F., Qiao L., Chang Y.L., Shi C.H., Chen K.M.
Rice (N Y) 2016 9(1) 37
rel2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls leaf rolling in Rice.
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Lloyd J.P., Seddon A.E., Moghe G.D., Simenc M.C., Shiu S.H.
Plant Cell 2015
Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes.
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Yang Y., Zhong J., Ouyang Y.D., Yao J.
Gene 2013 528(2) 221-35
The integrative expression and co-expression analysis of the AGO gene family in rice.
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Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, Kapoor S.
BMC Genomics. 2008 9 451
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice.
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Nagasaki H, Itoh J, Hayashi K, Hibara K, Satoh-Nagasawa N, Nosaka M, Mukouhata M, Ashikari M, Kitano H, Matsuoka M, Nagato Y, Sato Y.
Proc. Natl. Acad. Sci. U.S.A. 2007 104(37) 14867-71
The small interfering RNA production pathway is required for shoot meristem initiation in rice.
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Shi,Z., Wang,J., Wan,X., Shen,G., Wang,X. and Zhang,J.
Planta. 2007 226(1) 99-108
Over-expression of rice OsAGO7 gene induces upward curling of the leaf blade that enhanced erect-leaf habit.
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Satoh, N., S-K. Hong, A. Nishimura, M. Matsuoka, H. Kitano, Y. Nagato.
Development 1999 126 3629-3636.
Initiation of shoot apical meristem in rice: characterization of four SHOOTLESS genes.
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Satoh, N., S.K. Hong, M. Matsuoka, H. Kitano and Y. Nagato
RGN 1997 14 145-147.
Characterization of shootless mutants in rice.
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Satoh, N., S.K. Hong, H. Kitano, M. Matsuoka and Y. Nagato
Breeding Science 1996 46(Suppl. 2) 270
Characterization of rice shootless mutants using several molecular markers.
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Hong, S.K., T, Aoki, H. Kitano, H. Satoh and Y. Nagato
Dev Genet. 1995 16 298-310.
Phenotypic diversity of 188 rice embryo mutants.
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TextPresso Search
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Search textpresso for SHL4
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060882
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Ontologies
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Gene Ontology
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organ morphogenesis( GO:0009887 )
tissue development( GO:0009888 )
nucleic acid binding( GO:0003676 )
maintenance of shoot apical meristem identity( GO:0010492 )
RNA interference( GO:0016246 )
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Trait Ontology
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embryo related trait( TO:0000064 )
leaf curling( TO:0002681 )
leaf angle( TO:0000206 )
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Plant Ontology
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plant embryo( PO:0009009 )
apical meristem( PO:0020144 )
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Related Strains
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Induced Mutation Lines(National Inst. of Genetics)
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1
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Lethal Embryo Mutation strain
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3
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Phenotype images
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Click to full size image in new window
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Photo from
Y. Nagato
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Last updated
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Jan 13, 2022
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