Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol AGO1D
Gene Symbol Synonym OsAGO1d, AGO1d
Gene Name Synonym Protein argonaute 1D
Allele osago1d- 1, osago1d-2, osago1d-3
Chromosome No. 6
Explanation Q5Z5B2. an OsMIR168a's target gene.
Trait Class Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK122176
MSU ID LOC_Os06g51310.1
RAP ID Os06g0729300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Si F., Luo H., Yang C., Gong J., Yan B., Liu C., Song X., Cao X.
Sci China Life Sci 2022   
Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.
Liu C., Li N., Lu Z., Sun Q., Pang X., Xiang X., Deng C., Xiong Z., Shu K., Yang F., Hu Z.
Front Plant Sci 2022  13  839457
CG and CHG Methylation Contribute to the Transcriptional Control of OsPRR37-output Genes in Rice.
Zhou J., Zhang R., Jia X., Tang X., Guo Y., Yang H., Zheng X., Qian Q., Qi Y., Zhang Y.
Plant Biotechnol. J. 2022  20(2)  310-322
CRISPR-Cas9 mediated OsMIR168a knockout reveals its pleiotropy in rice.
Araki S., Le N.T., Koizumi K., Villar-Briones A., Nonomura K.I., Endo M., Inoue H., Saze H., Komiya R.
Nat Commun 2020  11(1)  3115
miR2118-dependent U-rich phasiRNA production in rice anther wall development.
Fei Q., Yang L., Liang W., Zhang D., Meyers B.C.
J. Exp. Bot. 2016  67(21)  6037-6049
Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways.
Wu J., Yang Z., Wang Y., Zheng L., Ye R., Ji Y., Zhao S., Ji S., Liu R., Xu L., Zheng H., Zhou Y., Zhang X., Cao X., Xie L., Wu Z., Qi Y., Li Y.
Elife 2015  4 
Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA.
Yang Y., Zhong J., Ouyang Y.D., Yao J.
Gene 2013  528(2)  221-35
The integrative expression and co-expression analysis of the AGO gene family in rice.
Wu L,Zhang Q,Zhou H,Ni F,Wu X,Qi Y
Plant Cell 2009  21(11)  3421-35
Rice MicroRNA effector complexes and targets.
Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, Kapoor S.
BMC Genomics. 2008  9  451
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice.
TextPresso Search Search textpresso for AGO1D ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology regulation of programmed cell death( GO:0043067 )
RNA binding( GO:0003723 )
response to cold( GO:0009409 )
anther development( GO:0048653 )
nucleic acid binding( GO:0003676 )
mitochondrion( GO:0005739 )
gene silencing by RNA( GO:0031047 )
Trait Ontology genic male sterility-thermo sensitive( TO:0000067 )
male sterility( TO:0000437 )
cold tolerance( TO:0000303 )
pollen fertility( TO:0000421 )
stamen length( TO:0002609 )
stamen size( TO:0002601 )
stamen anatomy and morphology trait( TO:0000215 )
anther shape( TO:0000214 )
Plant Ontology anther( PO:0009066 )
anther wall( PO:0000002 )
anther development stage( PO:0001004 )
E anther wall tapetum degeneration initiated stage( PO:0001032 )
Related Strains
Phenotype images
Last updated
Mar 13, 2023