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Basic Information
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CGSNL Gene Symbol
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AGO1D
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Gene Symbol Synonym
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OsAGO1d, AGO1d
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CGSNL Gene Name
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ARGONAUTE 1D
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Gene Name Synonym
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Protein argonaute 1D
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Protein Name
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PROTEIN ARGONAUTE 1D
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Allele
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osago1d- 1, osago1d-2, osago1d-3
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Chromosome No.
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6
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Explanation
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Q5Z5B2. an OsMIR168a's target gene.
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Trait Class
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Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK122176
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MSU ID
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LOC_Os06g51310.1
LOC_Os06g51310.2
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RAP ID
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Os06g0729300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Si F., Luo H., Yang C., Gong J., Yan B., Liu C., Song X., Cao X.
Sci China Life Sci 2022
Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.
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Liu C., Li N., Lu Z., Sun Q., Pang X., Xiang X., Deng C., Xiong Z., Shu K., Yang F., Hu Z.
Front Plant Sci 2022 13 839457
CG and CHG Methylation Contribute to the Transcriptional Control of OsPRR37-output Genes in Rice.
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Zhou J., Zhang R., Jia X., Tang X., Guo Y., Yang H., Zheng X., Qian Q., Qi Y., Zhang Y.
Plant Biotechnol. J. 2022 20(2) 310-322
CRISPR-Cas9 mediated OsMIR168a knockout reveals its pleiotropy in rice.
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Araki S., Le N.T., Koizumi K., Villar-Briones A., Nonomura K.I., Endo M., Inoue H., Saze H., Komiya R.
Nat Commun 2020 11(1) 3115
miR2118-dependent U-rich phasiRNA production in rice anther wall development.
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Fei Q., Yang L., Liang W., Zhang D., Meyers B.C.
J. Exp. Bot. 2016 67(21) 6037-6049
Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways.
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Wu J., Yang Z., Wang Y., Zheng L., Ye R., Ji Y., Zhao S., Ji S., Liu R., Xu L., Zheng H., Zhou Y., Zhang X., Cao X., Xie L., Wu Z., Qi Y., Li Y.
Elife 2015 4
Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA.
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Yang Y., Zhong J., Ouyang Y.D., Yao J.
Gene 2013 528(2) 221-35
The integrative expression and co-expression analysis of the AGO gene family in rice.
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Wu L,Zhang Q,Zhou H,Ni F,Wu X,Qi Y
Plant Cell 2009 21(11) 3421-35
Rice MicroRNA effector complexes and targets.
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Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, Kapoor S.
BMC Genomics. 2008 9 451
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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regulation of programmed cell death( GO:0043067 )
RNA binding( GO:0003723 )
response to cold( GO:0009409 )
anther development( GO:0048653 )
nucleic acid binding( GO:0003676 )
mitochondrion( GO:0005739 )
gene silencing by RNA( GO:0031047 )
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Trait Ontology
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genic male sterility-thermo sensitive( TO:0000067 )
male sterility( TO:0000437 )
cold tolerance( TO:0000303 )
pollen fertility( TO:0000421 )
stamen length( TO:0002609 )
stamen size( TO:0002601 )
stamen anatomy and morphology trait( TO:0000215 )
anther shape( TO:0000214 )
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Plant Ontology
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anther( PO:0009066 )
anther wall( PO:0000002 )
anther development stage( PO:0001004 )
E anther wall tapetum degeneration initiated stage( PO:0001032 )
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Related Strains
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Phenotype images
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Last updated
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Mar 13, 2023
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