Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ABI5
Gene Symbol Synonym OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1
CGSNL Gene Name ABA INSENSITIVE 5
Gene Name Synonym ABA Insensitive 5, bZIP-type transcription factor ABI5, bZIP transcription factors OsABI5, bZIP transcription factor 10, Abscisic acid insensitive 5
Protein Name BZIP-TYPE TRANSCRIPTION FACTOR ABI5
Allele abi5, abi5-1, abi5-2, Osabi5, osabi5-1, osabi5-2
Chromosome No. 1
Explanation EF199630, EF199631. BGIOSGA004837 (indica). PO:0020091; male gametophyte ; PO:0009049; inflorescence. GRO:0007047; 02-seedling. AU063505, AU093081. GO:1903285: positive regulation of hydrogen peroxide catabolic process. GO:1901698: response to nitrogen compound. GO:0141067: intracellular nitrogen homeostasis. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1903314: regulation of nitrogen cycle metabolic process.
Trait Class Reproductive organ - Pollination, fertilization, fertility - Male sterility
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Expression
Sequence/Locus
cDNA Accession No. AK070998
MSU ID LOC_Os01g64000.1
LOC_Os01g64000.2
LOC_Os01g64000.3
RAP ID Os01g0859300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Taniguchi S., Takeda A., Kiryu M., Gomi K.
Int J Mol Sci 2023  24(2) 
Jasmonic Acid-Induced β-Cyclocitral Confers Resistance to Bacterial Blight and Negatively Affects Abscisic Acid Biosynthesis in Rice.
Jiang M., Song Y., Yang R., Zheng C., Zheng Y., Zhang H., Li S., Tan Y., Huang J., Shu Q., Li R.
Plant Commun 2023    100674
Melatonin activates the OsbZIP79-OsABI5 module that orchestrates nitrogen and ROS homeostasis to alleviate nitrogen-limitation stress in rice.
Liu J., Shen L., Guo L., Zhang G., Gao Z., Zhu L., Hu J., Dong G., Ren D., Zhang Q., Li Q., Zeng D., Yan C., Qian Q.
Rice (N Y) 2023  16(1)  47
OsSTS, a Novel Allele of Mitogen-Activated Protein Kinase Kinase 4 (OsMKK4), Controls grain size and salt tolerance in Rice.
Du F., Wang Y., Wang J., Li Y., Zhang Y., Zhao X., Xu J., Li Z., Zhao T., Wang W., Fu B.
J Integr Plant Biol 2023   
The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.
He Y., Sun S., Zhao J., Huang Z., Peng L., Huang C., Tang Z., Huang Q., Wang Z.
Nat Commun 2023  14(1)  2296
UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.
Lou D., Lu S., Chen Z., Lin Y., Yu D., Yang X.
BMC Plant Biol. 2023  23(1)  53
Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.
Li Q., Zhai W., Wei J., Jia Y.
Front Genet 2023  14  1111318
Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.
Ge L., Guo H., Li X., Tang M., Guo C., Bao H., Huang L., Yi Y., Cui Y., Chen L.
Front Plant Sci 2022  13  863233
OsSIDP301, a Member of the DUF1644 Family, Negatively Regulates Salt Stress and grain size in Rice.
Yang B., Chen M., Zhan C., Liu K., Cheng Y., Xie T., Zhu P., He Y., Zeng P., Tang H., Tsugama D., Chen S., Zhang H., Cheng J.
J. Exp. Bot. 2022   
Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via GWAS.
Yoshida H., Hirano K., Yano K., Wang F., Mori M., Kawamura M., Koketsu E., Hattori M., Ordonio R.L., Huang P., Yamamoto E., Matsuoka M.
Nat Commun 2022  13(1)  5665
Genome-wide association study identifies a gene responsible for temperature-dependent rice germination.
Liu Y.H., Jiang M., Li R.Q., Huang J.Z., Shu Q.Y.
Plants (Basel) 2021  10(3) 
OsKEAP1 Interacts with OsABI5 and Its Downregulation Increases the Transcription of <i>OsABI5</i> and the ABA Response Genes in Germinating Rice Seeds.
Wang G., Li X., Li Y., Ye N., Li H., Zhang J.
J. Exp. Bot. 2021  72(4)  1384-1398
Comprehensive epigenome and transcriptome analysis of carbon reserve remobilization in indica and japonica rice stems under moderate soil drying.
Chen H.C., Chien T.C., Chen T.Y., Chiang M.H., Lai M.H., Chang M.C.
Rice (N Y) 2021  14(1)  82
Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.
Li R., Jiang M., Song Y., Zhang H.
Front Plant Sci 2021  12  727596
Melatonin Alleviates Low-Temperature Stress <i>via</i> ABI5-Mediated Signals During Seed Germination in Rice (<i>Oryza sativa</i> L.).
Liu Q., Dong G.R., Ma Y.Q., Zhao S.M., Liu X., Li X.K., Li Y.J., Hou B.K.
Front Plant Sci 2021  12  790195
Rice Glycosyltransferase Gene <i>UGT85E1</i> Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
Wang H., Zhang Y., Xiao N., Zhang G., Wang F., Chen X., Fang R.
Plant Physiol. 2020  183(3)  1157-1170
Rice <i>GERMIN-LIKE PROTEIN 2-1</i> Functions in seed dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.
Sakuraba Y., Kim D., Han S.H., Kim S.H., Piao W., Yanagisawa S., An G., Paek N.C.
Plant Cell 2020  32(3)  630-649
Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced leaf senescence in Rice.
Shi Y., Chang Y.L., Wu H.T., Shalmani A., Liu W.T., Li W.Q., Xu J.W., Chen K.M.
Plant Cell Rep. 2020  39(12)  1767-1784
OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice.
He Y., Zhao J., Yang B., Sun S., Peng L., Wang Z.
Plant Biotechnol. J. 2020   
Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigour through mediating crosstalk between auxin and abscisic acid in rice.
Yin X., Liu X., Xu B., Lu P., Dong T., Yang D., Ye T., Feng Y.Q., Wu Y.
J. Exp. Bot. 2019  70(15)  3895-3909
OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the abscisic acid response in rice.
Xu F., Tang J., Gao S., Cheng X., Du L., Chu C.
Plant J. 2019  100(5)  1036-1051
Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.
Xu N., Chu Y., Chen H., Li X., Wu Q., Jin L., Wang G., Huang J.
PLoS Genet. 2018  14(10)  e1007662
Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.
Wang Y., Li D., Gao J., Li X., Zhang R., Jin X., Hu Z., Zheng B., Persson S., Chen P.
J. Exp. Bot. 2017   
The 2'-O-methyladenosine nucleoside modification gene OsTrm13 positively regulates salt stress tolerance in rice.
Lou D., Wang H., Liang G., Yu D.
Front Plant Sci 2017  8  993
OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.
Bhatnagar N., Min M.K., Choi E.H., Kim N., Moon S.J., Yoon I., Kwon T., Jung K.H., Kim B.G.
Plant Mol. Biol. 2016   
The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.
Lee S.H., Sakuraba Y., Lee T., Kim K.W., An G., Lee H.Y., Paek N.C.
J Integr Plant Biol 2014   
Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.
Fukumoto T., Kano A., Ohtani K., Inoue M., Yoshihara A., Izumori K., Tajima S., Shigematsu Y., Tanaka K., Ohkouchi T., Ishida Y., Nishizawa Y., Tada Y., Ichimura K., Gomi K., Yoo S.D., Sheen J., Akimitsu K.
Planta 2013  237(5)  1379-91
Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L.
Todaka D., Nakashima K., Shinozaki K., Kazuko Yamaguchi-Shinozaki
Rice (N Y) 2012  5  6
Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice.
Kim H., Hwang H., Hong J.W., Lee Y.N., Ahn I.P., Yoon I.S., Yoo S.D., Lee S., Lee S.C., Kim B.G.
J. Exp. Bot. 2012  63(2)  1013-24
A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.
Tao Z., Kou Y., Liu H., Li X., Xiao J., Wang S.
J. Exp. Bot. 2011  62(14)  4863-74
OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice.
Hong J.Y., Chae M.J., Lee I.S., Lee Y.N., Nam M.H., Kim D.Y., Byun M.O., Yoon I.S.
Phytochemistry 2011  72(1)  27-36
Phosphorylation-mediated regulation of a rice ABA responsive element binding factor.
Shobbar ZS,Oane R,Gamuyao R,De Palma J,Malboobi MA,Karimzadeh G,Javaran MJ,Bennett J
New Phytol. 2008  178  68-79
Abscisic acid regulates gene expression in cortical fiber cells and silica cells of rice shoots.
Zou M, Guan Y, Ren H, Zhang F, Chen F.
Plant Mol. Biol. 2008  66(6)  675-83
A bZIP trA bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance.
Nijhawan A,Jain M,Tyagi AK,Khurana JP
Plant Physiol. 2008  146  333-50
Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice.
Chae,M.J., Lee,J.S., Nam,M.H., Cho,K., Hong,J.Y., Yi,S.A., Suh,S.C. and Yoon,I.S.
Plant Mol. Biol. 2007  63(2)  151-169
A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling.
Zou,M., Guan,Y., Ren,H., Zhang,F. and Chen,F.
Biochem. Biophys. Res. Commun. 2007  360(2)  307-313
Characterization of alternative splicing products of bZIP transcription factors OsABI5
TextPresso Search Search textpresso for ABI5 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology abscisic acid catabolic process( GO:0046345 )
response to nutrient levels( GO:0031667 )
cellular response to nitrogen starvation( GO:0006995 )
response to starvation( GO:0042594 )
nitrogen utilization( GO:0019740 )
regulation of nitrogen compound metabolic process( GO:0051171 )
negative regulation of seed germination( GO:0010187 )
response to jasmonic acid stimulus( GO:0009753 )
response to auxin stimulus( GO:0009733 )
regulation of abscisic acid mediated signaling( GO:0009787 )
response to hormone stimulus( GO:0009725 )
melatonin biosynthetic process( GO:0030187 )
regulation of seed germination( GO:0010029 )
positive regulation of gibberellin biosynthetic process( GO:0010372 )
hydrogen peroxide catabolic process( GO:0042744 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
response to cold( GO:0009409 )
response to water deprivation( GO:0009414 )
pollen maturation( GO:0010152 )
sequence-specific DNA binding( GO:0043565 )
regulation of transcription( GO:0045449 )
abscisic acid mediated signaling( GO:0009738 )
response to salt stress( GO:0009651 )
response to abscisic acid stimulus( GO:0009737 )
seed germination( GO:0009845 )
Trait Ontology pollen sterility( TO:0000053 )
seed dormancy( TO:0000253 )
fertility related trait( TO:0000420 )
abscisic acid sensitivity( TO:0000615 )
salt sensitivity( TO:0000429 )
plant growth hormone sensitivity( TO:0000401 )
hydrogen peroxide content( TO:0000605 )
cold tolerance( TO:0000303 )
germinability at low temperature( TO:0000483 )
drought tolerance( TO:0000276 )
germination rate( TO:0000430 )
auxin sensitivity( TO:0000163 )
jasmonic acid sensitivity( TO:0000172 )
vigor related trait( TO:0000250 )
nitrogen sensitivity( TO:0000011 )
abscisic acid content( TO:0002667 )
Plant Ontology inflorescence( PO:0009049 )
obsolete microgametophyte( PO:0020091 )
0 seed germination stage( PO:0007057 )
seed( PO:0009010 )
Related Strains
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Phenotype images
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Last updated
Jan 12, 2024


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