|
Basic Information
|
|
CGSNL Gene Symbol
|
ABI5
|
|
Gene Symbol Synonym
|
OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1
|
|
CGSNL Gene Name
|
ABA INSENSITIVE 5
|
|
Gene Name Synonym
|
ABA Insensitive 5, bZIP-type transcription factor ABI5, bZIP transcription factors OsABI5, bZIP transcription factor 10, Abscisic acid insensitive 5
|
|
Protein Name
|
BZIP-TYPE TRANSCRIPTION FACTOR ABI5
|
|
Allele
|
abi5, abi5-1, abi5-2, Osabi5, osabi5-1, osabi5-2, osbzip10, osbzip10-1, osbzip10-2
|
|
Chromosome No.
|
1
|
|
Explanation
|
EF199630, EF199631. BGIOSGA004837 (indica). PO:0020091; male gametophyte. GRO:0007047; 02-seedling. AU063505, AU093081. GO:1903285: positive regulation of hydrogen peroxide catabolic process. GO:1901698: response to nitrogen compound. GO:0141067: intracellular nitrogen homeostasis. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1903314: regulation of nitrogen cycle metabolic process. GO:1902040: positive regulation of seed dormancy process. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. GO:1900140 regulation of seedling development. GO:2000904: regulation of starch metabolic process. TO:0001069: cooking quality trait. GO:0098869: cellular oxidant detoxification. TO:0020106: Indole-3-acetic acid content.
|
|
Trait Class
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Seed - Morphological traits - Grain shape
Seed - Physiological traits - Dormancy
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Character as QTL - Germination
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
AK070998
|
|
MSU ID
|
LOC_Os01g64000.1
LOC_Os01g64000.2
LOC_Os01g64000.3
|
|
RAP ID
|
Os01g0859300
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
-
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Wang B., Luo Y., Zhong B., Xu H., Wang F., Li W., Lin M., Chen J., Chen L., Liang M., Dai X.
Sci Rep 2025 15(1) 6730
The abscisic acid signaling negative regulator OsPP2C68 confers drought and salinity tolerance to rice.
|
|
Ma T., Wang Q., Wu T., Hao Q., Huang Y., Mou C., Miao R., Lan J., Zhang F., Wang P., Zhu Z., Li K., Song J., Hu C., Chen Y., Lu B., Wu Y., Liu S., Jiang L., Wan J.
Plant Biotechnol. J. 2025
Quiescin Sulfhydryl Oxidase-Like 1 Positively Regulates seed dormancy in Rice.
|
|
Huang K., Lu F., Chen P., Jiao G., Lin H., Zhang J., Zhao S., Cao R., Shao G., Sheng Z., Hu S., Tang S., Hu P., Wei X.
Plant Biotechnol. J. 2025 23(7) 2583-2594
A large-scale gene regulatory network for rice endosperm starch biosynthesis and its application in genetic improvement of rice quality.
|
|
Singh J., Sandhu N., Kumar A., Raigar O.P., Bains S., Augustine G., Gupta M., Kharche E., Kalia A., Bains N.S., Kumar A.
Rice (N Y) 2025 18(1) 5
Deciphering Regulatory Networks Governing Seedling Emergence in Deep-Sown Direct-Seeded Rice Cultivation.
|
|
Hu Y., Lin Y., Bai J., Xu X., Wang Z., Ding C., Ding Y., Chen L.
J. Exp. Bot. 2024 75(10) 2917-2932
AMPK activator 991 specifically activates SnRK1 and thereby affects seed germination in rice.
|
|
Jiang M., Zhang H., Song Y., Chen J., Bai J., Tang J., Wang Q., Fotopoulos V., Zhu Q.H., Yang R., Li R.
Plant J. 2024 119(5) 2181-2198
Transcription factor OsbZIP10 modulates rice grain quality by regulating OsGIF1.
|
|
Xie T., Xu J., Hu W., Shan S., Gao H., Shen J., Chen X., Jia Y., Gao X., Huang J., Zhang H., Cheng J.
Plant J. 2024
OsAAH confers salt tolerance in rice seedlings.
|
|
Guo N., Tang S., Wang Y., Chen W., An R., Ren Z., Hu S., Tang S., Wei X., Shao G., Jiao G., Xie L., Wang L., Chen Y., Zhao F., Sheng Z., Hu P.
Nat Commun 2024 15(1) 1134
A mediator of OsbZIP46 deactivation and degradation negatively regulates seed dormancy in rice.
|
|
Li Q., Zhai W., Wei J., Jia Y.
Front Genet 2023 14 1111318
Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.
|
|
Liu J., Shen L., Guo L., Zhang G., Gao Z., Zhu L., Hu J., Dong G., Ren D., Zhang Q., Li Q., Zeng D., Yan C., Qian Q.
Rice (N Y) 2023 16(1) 47
OsSTS, a Novel Allele of Mitogen-Activated Protein Kinase Kinase 4 (OsMKK4), Controls grain size and salt tolerance in Rice.
|
|
Jiang M., Song Y., Yang R., Zheng C., Zheng Y., Zhang H., Li S., Tan Y., Huang J., Shu Q., Li R.
Plant Commun 2023 100674
Melatonin activates the OsbZIP79-OsABI5 module that orchestrates nitrogen and ROS homeostasis to alleviate nitrogen-limitation stress in rice.
|
|
Du F., Wang Y., Wang J., Li Y., Zhang Y., Zhao X., Xu J., Li Z., Zhao T., Wang W., Fu B.
J Integr Plant Biol 2023
The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.
|
|
Wang Y., Wu F., Lin Q., Sheng P., Wu Z., Jin X., Chen W., Li S., Luo S., Duan E., Wang J., Ma W., Ren Y., Cheng Z., Zhang X., Lei C., Guo X., Wang H., Zhu S., Wan J.
Plant Physiol. 2023 191(3) 1857-1870
A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.
|
|
He Y., Sun S., Zhao J., Huang Z., Peng L., Huang C., Tang Z., Huang Q., Wang Z.
Nat Commun 2023 14(1) 2296
UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.
|
|
Lou D., Lu S., Chen Z., Lin Y., Yu D., Yang X.
BMC Plant Biol. 2023 23(1) 53
Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.
|
|
Taniguchi S., Takeda A., Kiryu M., Gomi K.
Int J Mol Sci 2023 24(2)
Jasmonic Acid-Induced β-Cyclocitral Confers Resistance to Bacterial Blight and Negatively Affects Abscisic Acid Biosynthesis in Rice.
|
|
Ge L., Guo H., Li X., Tang M., Guo C., Bao H., Huang L., Yi Y., Cui Y., Chen L.
Front Plant Sci 2022 13 863233
OsSIDP301, a Member of the DUF1644 Family, Negatively Regulates Salt Stress and grain size in Rice.
|
|
Yoshida H., Hirano K., Yano K., Wang F., Mori M., Kawamura M., Koketsu E., Hattori M., Ordonio R.L., Huang P., Yamamoto E., Matsuoka M.
Nat Commun 2022 13(1) 5665
Genome-wide association study identifies a gene responsible for temperature-dependent rice germination.
|
|
Yang B., Chen M., Zhan C., Liu K., Cheng Y., Xie T., Zhu P., He Y., Zeng P., Tang H., Tsugama D., Chen S., Zhang H., Cheng J.
J. Exp. Bot. 2022
Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via GWAS.
|
|
Liu Y.H., Jiang M., Li R.Q., Huang J.Z., Shu Q.Y.
Plants (Basel) 2021 10(3)
OsKEAP1 Interacts with OsABI5 and Its Downregulation Increases the Transcription of <i>OsABI5</i> and the ABA Response Genes in Germinating Rice Seeds.
|
|
Wang G., Li X., Li Y., Ye N., Li H., Zhang J.
J. Exp. Bot. 2021 72(4) 1384-1398
Comprehensive epigenome and transcriptome analysis of carbon reserve remobilization in indica and japonica rice stems under moderate soil drying.
|
|
Li R., Jiang M., Song Y., Zhang H.
Front Plant Sci 2021 12 727596
Melatonin Alleviates Low-Temperature Stress <i>via</i> ABI5-Mediated Signals During Seed Germination in Rice (<i>Oryza sativa</i> L.).
|
|
Chen H.C., Chien T.C., Chen T.Y., Chiang M.H., Lai M.H., Chang M.C.
Rice (N Y) 2021 14(1) 82
Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.
|
|
Liu Q., Dong G.R., Ma Y.Q., Zhao S.M., Liu X., Li X.K., Li Y.J., Hou B.K.
Front Plant Sci 2021 12 790195
Rice Glycosyltransferase Gene <i>UGT85E1</i> Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.
|
|
He Y., Zhao J., Yang B., Sun S., Peng L., Wang Z.
Plant Biotechnol. J. 2020
Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigour through mediating crosstalk between auxin and abscisic acid in rice.
|
|
Wang H., Zhang Y., Xiao N., Zhang G., Wang F., Chen X., Fang R.
Plant Physiol. 2020 183(3) 1157-1170
Rice <i>GERMIN-LIKE PROTEIN 2-1</i> Functions in seed dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.
|
|
Shi Y., Chang Y.L., Wu H.T., Shalmani A., Liu W.T., Li W.Q., Xu J.W., Chen K.M.
Plant Cell Rep. 2020 39(12) 1767-1784
OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice.
|
|
Sakuraba Y., Kim D., Han S.H., Kim S.H., Piao W., Yanagisawa S., An G., Paek N.C.
Plant Cell 2020 32(3) 630-649
Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced leaf senescence in Rice.
|
|
Xu F., Tang J., Gao S., Cheng X., Du L., Chu C.
Plant J. 2019 100(5) 1036-1051
Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.
|
|
Yin X., Liu X., Xu B., Lu P., Dong T., Yang D., Ye T., Feng Y.Q., Wu Y.
J. Exp. Bot. 2019 70(15) 3895-3909
OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the abscisic acid response in rice.
|
|
Xu N., Chu Y., Chen H., Li X., Wu Q., Jin L., Wang G., Huang J.
PLoS Genet. 2018 14(10) e1007662
Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.
|
|
Lou D., Wang H., Liang G., Yu D.
Front Plant Sci 2017 8 993
OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.
|
|
Wang Y., Li D., Gao J., Li X., Zhang R., Jin X., Hu Z., Zheng B., Persson S., Chen P.
J. Exp. Bot. 2017
The 2'-O-methyladenosine nucleoside modification gene OsTrm13 positively regulates salt stress tolerance in rice.
|
|
Bhatnagar N., Min M.K., Choi E.H., Kim N., Moon S.J., Yoon I., Kwon T., Jung K.H., Kim B.G.
Plant Mol. Biol. 2016
The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.
|
|
Lee S.H., Sakuraba Y., Lee T., Kim K.W., An G., Lee H.Y., Paek N.C.
J Integr Plant Biol 2014
Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.
|
|
Fukumoto T., Kano A., Ohtani K., Inoue M., Yoshihara A., Izumori K., Tajima S., Shigematsu Y., Tanaka K., Ohkouchi T., Ishida Y., Nishizawa Y., Tada Y., Ichimura K., Gomi K., Yoo S.D., Sheen J., Akimitsu K.
Planta 2013 237(5) 1379-91
Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L.
|
|
Todaka D., Nakashima K., Shinozaki K., Kazuko Yamaguchi-Shinozaki
Rice (N Y) 2012 5 6
Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice.
|
|
Kim H., Hwang H., Hong J.W., Lee Y.N., Ahn I.P., Yoon I.S., Yoo S.D., Lee S., Lee S.C., Kim B.G.
J. Exp. Bot. 2012 63(2) 1013-24
A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.
|
|
Tao Z., Kou Y., Liu H., Li X., Xiao J., Wang S.
J. Exp. Bot. 2011 62(14) 4863-74
OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice.
|
|
Hong J.Y., Chae M.J., Lee I.S., Lee Y.N., Nam M.H., Kim D.Y., Byun M.O., Yoon I.S.
Phytochemistry 2011 72(1) 27-36
Phosphorylation-mediated regulation of a rice ABA responsive element binding factor.
|
|
Zou M, Guan Y, Ren H, Zhang F, Chen F.
Plant Mol. Biol. 2008 66(6) 675-83
A bZIP trA bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance.
|
|
Shobbar ZS,Oane R,Gamuyao R,De Palma J,Malboobi MA,Karimzadeh G,Javaran MJ,Bennett J
New Phytol. 2008 178 68-79
Abscisic acid regulates gene expression in cortical fiber cells and silica cells of rice shoots.
|
|
Nijhawan A,Jain M,Tyagi AK,Khurana JP
Plant Physiol. 2008 146 333-50
Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice.
|
|
Zou,M., Guan,Y., Ren,H., Zhang,F. and Chen,F.
Biochem. Biophys. Res. Commun. 2007 360(2) 307-313
Characterization of alternative splicing products of bZIP transcription factors OsABI5
|
|
Chae,M.J., Lee,J.S., Nam,M.H., Cho,K., Hong,J.Y., Yi,S.A., Suh,S.C. and Yoon,I.S.
Plant Mol. Biol. 2007 63(2) 151-169
A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
sucrose metabolic process( GO:0005985 )
cell redox homeostasis( GO:0045454 )
starch metabolic process( GO:0005982 )
positive regulation of transcription, DNA-dependent( GO:0045893 )
response to nutrient levels( GO:0031667 )
cellular response to nitrogen starvation( GO:0006995 )
response to starvation( GO:0042594 )
nitrogen utilization( GO:0019740 )
regulation of starch biosynthetic process( GO:0010581 )
abscisic acid catabolic process( GO:0046345 )
seed dormancy( GO:0010162 )
regulation of nitrogen compound metabolic process( GO:0051171 )
negative regulation of seed germination( GO:0010187 )
response to jasmonic acid stimulus( GO:0009753 )
response to auxin stimulus( GO:0009733 )
regulation of abscisic acid mediated signaling( GO:0009787 )
response to hormone stimulus( GO:0009725 )
melatonin biosynthetic process( GO:0030187 )
regulation of seed germination( GO:0010029 )
positive regulation of gibberellin biosynthetic process( GO:0010372 )
hydrogen peroxide catabolic process( GO:0042744 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
response to cold( GO:0009409 )
response to water deprivation( GO:0009414 )
pollen maturation( GO:0010152 )
sequence-specific DNA binding( GO:0043565 )
regulation of transcription( GO:0045449 )
abscisic acid mediated signaling( GO:0009738 )
response to salt stress( GO:0009651 )
response to abscisic acid stimulus( GO:0009737 )
seed germination( GO:0009845 )
|
|
Trait Ontology
|
pollen sterility( TO:0000053 )
seed dormancy( TO:0000253 )
fertility related trait( TO:0000420 )
abscisic acid sensitivity( TO:0000615 )
salt sensitivity( TO:0000429 )
plant growth hormone sensitivity( TO:0000401 )
hydrogen peroxide content( TO:0000605 )
cold tolerance( TO:0000303 )
germinability at low temperature( TO:0000483 )
drought tolerance( TO:0000276 )
germination rate( TO:0000430 )
auxin sensitivity( TO:0000163 )
jasmonic acid sensitivity( TO:0000172 )
vigor related trait( TO:0000250 )
nitrogen sensitivity( TO:0000011 )
abscisic acid content( TO:0002667 )
seed quality( TO:0000162 )
grain yield( TO:0000396 )
starch content( TO:0000696 )
amylose content( TO:0000196 )
amylopectin content( TO:0000097 )
1000-seed weight( TO:0000382 )
starch grain synthesis( TO:0002658 )
starch grain shape( TO:0002656 )
chalky endosperm( TO:0000266 )
grain thickness( TO:0000399 )
grain weight( TO:0000590 )
alkali digestion( TO:0000134 )
endosperm color( TO:0000487 )
gel consistency( TO:0000211 )
gelatinization temperature( TO:0000462 )
panicle length( TO:0000040 )
seed set percent( TO:0000455 )
glucose content( TO:0000300 )
endosperm storage protein content( TO:0002653 )
fat and essential oil content( TO:0000604 )
auxin content( TO:0002672 )
grain size( TO:0000397 )
grain weight( TO:0000919 )
|
|
Plant Ontology
|
inflorescence( PO:0009049 )
obsolete microgametophyte( PO:0020091 )
0 seed germination stage( PO:0007057 )
seed( PO:0009010 )
whole plant fruit development stage( PO:0025500 )
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Mar 16, 2026
|
Update info.