Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol AGPS1
Gene Symbol Synonym OsAGPS1, APS1, OsAPS1, AGPsma
Gene Name Synonym sativa ADP-glucose pyrophosphorylase small subunit 1, ADP-glucose Pyrophosphorylase small subunit 1, AGPase small subunit 1, Adenosine diphosphate glucose pyrophosphorylase, adenosine diphosphoglucose pyrophosphorylase, ADP-glucose pyrophosphorylase small unit 1, AGPase S1
Chromosome No. 9
Explanation AP004011, AP004756. AY028315. GRO:0007141; C-embryo stage ; GRO:0007137; embryo development. a novel candidate gene for fine-mapped qACE9.
Trait Class Biochemical character
Seed - Physiological traits - Taste
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK060270
MSU ID LOC_Os09g12660.1
RAP ID Os09g0298200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.
Proc. Natl. Acad. Sci. U.S.A. 2020  117(42)  26503-26512
Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.
Lee H.S., Hwang W.H., Jeong J.H., Ahn S.H., Baek J.S., Jeong H.Y., Park H.K., Ku B.I., Yun J.T., Lee G.H., Choi K.J.
BMC Genomics 2019  20(1)  18
Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage.
Xiong Y., Ren Y., Li W., Wu F., Yang W., Huang X., Yao J.
J. Exp. Bot. 2019  70(15)  3765-3780
NF-YC12 is a key multi-functional regulator of accumulation of seed storage substances in rice.
Long W., Wang Y., Zhu S., Jing W., Wang Y., Ren Y., Tian Y., Liu S., Liu X., Chen L., Wang D., Zhong M., Zhang Y., Hu T., Zhu J., Hao Y., Zhu X., Zhang W., Wang C., Zhang W., Wan J.
Plant Physiol. 2018  177(2)  698-712
FLOURY shrunken endosperm1 Connects Phospholipid Metabolism and Amyloplast Development in Rice.
Wang H., Zhang Y., Sun L., Xu P., Tu R., Meng S., Wu W., Anis G.B., Hussain K., Riaz A., Chen D., Cao L., Cheng S., Shen X.
Int J Mol Sci 2018  19(8) 
<i>WB1</i>, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.
Zhu X., Shen W., Huang J., Zhang T., Zhang X., Cui Y., Sang X., Ling Y., Li Y., Wang N., Zhao F., Zhang C., Yang Z., He G.
Plant Cell Physiol. 2018  59(3)  487-499
Mutation of the OsSAC1 Gene, which Encodes an Endoplasmic Reticulum Protein with an Unknown Function, Causes Sugar Accumulation in Rice Leaves.
Pérez L., Soto E., Villorbina G., Bassie L., Medina V., Muñoz P., Capell T., Zhu C., Christou P., Farré G.
Transgenic Res. 2018  27(5)  423-439
CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.
Gao Y., Liu C., Li Y., Zhang A., Dong G., Xie L., Zhang B., Ruan B., Hong K., Xue D., Zeng D., Guo L., Qian Q., Gao Z.
Rice (N Y) 2016  9(1)  41
QTL analysis for chalkiness of rice and fine mapping of a candidate gene for qACE9.
Wei X., Jiao G., Lin H., Sheng Z., Shao G., Xie L., Tang S., Xu Q., Hu P.
J Integr Plant Biol 2016   
GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.
Yang J., Kim S.R., Lee S.K., Choi H., Jeon J.S., An G.
Plant Sci. 2015  240  79-89
Alanine aminotransferase 1 (OsAlaAT1) plays an essential role in the regulation of starch storage in rice endosperm.
Morita R., Sugino M., Hatanaka T., Misoo S., Fukayama H.
Plant Physiol. 2015  167(4)  1321-31
CO2-Responsive CONSTANS, CONSTANS-Like, and Time of Chlorophyll a/b Binding Protein Expression1 Protein Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.
Lu F.H., Park Y.J.
Genet Res (Camb) 2012  94  179-189
Sequence variations in OsAGPase significantly associated with amylose content and viscosity properties in rice (Oryza sativa L.)
Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH
Theor. Appl. Genet. 2011  122(1)  63-76
Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).
Zhang J,Nallamilli BR,Mujahid H,Peng Z
Plant J. 2010  64(4)  604-17
OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa).
Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.
Proc. Natl. Acad. Sci. U.S.A. 2009  106(51)  21760-5
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities
Lee SK, Hwang SK, Han M, Eom JS, Kang HG, Han Y, Choi SB, Cho MH, Bhoo SH, An G, Hahn TR, Okita TW, Jeon JS.
Plant Mol. Biol. 2007  65(4)  531-46.
Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.).
Yamaguchi, Takeshi
Plant Physiol. 2007  144(1)  258-277
Comprehensive Expression Profiling of Rice Grain Filling-Related Genes under High Temperature Using DNA Microarray.
Sikka,V.K., Choi,S.-B., Kavakli,I.H., Gupta,S., Ito,H. and Okita,T.W.
Plant Sci. 2001  161(3)  461-468
Subcellular compartmentation and allosteric regulation of the rice endosperm ADP-glucose pyrophosphorylase
TextPresso Search Search textpresso for AGPS1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0101317
Gene Ontology response to heat( GO:0009408 )
biosynthetic process( GO:0009058 )
glucose-1-phosphate adenylyltransferase activity( GO:0008878 )
nucleotidyltransferase activity( GO:0016779 )
starch biosynthetic process( GO:0019252 )
amyloplast( GO:0009501 )
plastid( GO:0009536 )
response to flooding( GO:0009413 )
Trait Ontology chalky endosperm( TO:0000266 )
submergence sensitivity( TO:0000286 )
heat tolerance( TO:0000259 )
Plant Ontology endosperm( PO:0009089 )
seed maturation stage( PO:0007632 )
Related Strains
Phenotype images
Last updated
Jul 6, 2022