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Basic Information
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CGSNL Gene Symbol
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AGPL3
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Gene Symbol Synonym
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OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1
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CGSNL Gene Name
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ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 3
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Gene Name Synonym
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sativa ADP-glucose pyrophosphorylase large subunit 3, ADP-glucose Pyrophosphorylase large subunit 3, AGPase large subunit 3, AGPase large unit 1, AGPase L1
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Protein Name
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ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 3
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Allele
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Chromosome No.
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5
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Explanation
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Q688T8. AC007858, AP120988. D50317. BGIOSGA017490. EC=2.7.7.27 Adenosine diphosphate glucose pyrophosphorylase. OsAGPL1 in Lee et al. 2007, Lu et al. 2012, Okamura et al. 2013, Okamura et al. 2014, Yang et al. 2015, Morita et al. 2015, Long et al. 2018, Zhu et al. 2018, Lee et al. 2019, Baysal et al. 2020, Fukayama et ak. 2021, Liao et al. 2022, Liu et al. 2023, Hu et al. 2025, Huang et al. 2025.
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Trait Class
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Biochemical character
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK100910
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MSU ID
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LOC_Os05g50380.1
LOC_Os05g50380.2
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RAP ID
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Os05g0580000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
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RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Huang K., Chen L., Jiao G., Ruan Z., Li X., Tang S., Hu P., Wei X.
Life (Basel) 2025 15(6)
<i>OsMYBR1</i>, a 1R-MYB Family Transcription Factor Regulates Starch Biosynthesis in Rice Endosperm.
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Hu Y., Xue D., Wang S., Zhang Q., Zhang X., Yang J., Lv Y., Yan B., Yin Y., Cui Z., Li T., Chen W., Wang X.
Journal of Advanced Research 2025
An auxin response factor regulates tiller angle and shoot gravitropism by directly activating related gene expression in rice.
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Liu Z., Li P., Yu L., Hu Y., Du A., Fu X., Wu C., Luo D., Hu B., Dong H., Jiang H., Ma X., Huang W., Yang X., Tu S., Li H.
Int J Mol Sci 2023 24(9)
<i>OsMADS1</i> Regulates Grain Quality, Gene Expressions, and Regulatory Networks of Starch and Storage Protein Metabolisms in Rice.
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Jang Y.H., Park J.R., Kim E.G., Jan R., Asif S., Farooq M., Zhao D.D., Kim K.M.
Mol. Breed. 2023 43(5) 39
Efficient identification of palatability-related genes using QTL mapping in rice breeding.
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Liu C., Ma T., Yuan D., Zhou Y., Long Y., Li Z., Dong Z., Duan M., Yu D., Jing Y., Bai X., Wang Y., Hou Q., Liu S., Zhang J.S., Chen S.Y., Li D., Liu X., Li Z., Wang W., Li J., Wei X., Ma B., Wan X.
Plant Biotechnol. J. 2022 20(8) 1470-1486
The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.
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Liao Y., Ali A., Xue Z., Zhou X., Ye W., Guo D., Liao Y., Jiang P., Wu T., Zhang H., Xu P., Chen X., Zhou H., Liu Y., Wang W., Wu X.
Int J Mol Sci 2022 23(7)
Disruption of <i>LLM9428</i>/<i>OsCATC</i> Represses Starch Metabolism and Confers Enhanced Blast Resistance in Rice.
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Chen Z., Wang Y., Huang R., Zhang Z., Huang J., Yu F., Lin Y., Guo Y., Liang K., Zhou Y., Chen F.
BMC Plant Biol. 2022 22(1) 137
Integration of transcriptomic and proteomic analyses reveals several levels of metabolic regulation in the excess starch and early senescent leaf mutant LSES1 in rice.
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Fukayama H., Miyagawa F., Shibatani N., Koudou A., Sasayama D., Hatanaka T., Azuma T., Yamauchi Y., Matsuoka D., Morita R.
Plant Cell Environ. 2021 44(8) 2480-2493
CO2 -responsive CCT protein interacts with 14-3-3 proteins and controls the expression of starch synthesis-related genes.
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Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(42) 26503-26512
Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.
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Lee H.S., Hwang W.H., Jeong J.H., Ahn S.H., Baek J.S., Jeong H.Y., Park H.K., Ku B.I., Yun J.T., Lee G.H., Choi K.J.
BMC Genomics 2019 20(1) 18
Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage.
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Zhu X., Shen W., Huang J., Zhang T., Zhang X., Cui Y., Sang X., Ling Y., Li Y., Wang N., Zhao F., Zhang C., Yang Z., He G.
Plant Cell Physiol. 2018 59(3) 487-499
Mutation of the OsSAC1 Gene, which Encodes an Endoplasmic Reticulum Protein with an Unknown Function, Causes Sugar Accumulation in Rice Leaves.
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Pérez L., Soto E., Villorbina G., Bassie L., Medina V., Muñoz P., Capell T., Zhu C., Christou P., Farré G.
Transgenic Res. 2018 27(5) 423-439
CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.
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Long W., Wang Y., Zhu S., Jing W., Wang Y., Ren Y., Tian Y., Liu S., Liu X., Chen L., Wang D., Zhong M., Zhang Y., Hu T., Zhu J., Hao Y., Zhu X., Zhang W., Wang C., Zhang W., Wan J.
Plant Physiol. 2018 177(2) 698-712
FLOURY shrunken endosperm1 Connects Phospholipid Metabolism and Amyloplast Development in Rice.
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Morita R., Sugino M., Hatanaka T., Misoo S., Fukayama H.
Plant Physiol. 2015 167(4) 1321-31
CO2-Responsive CONSTANS, CONSTANS-Like, and Time of Chlorophyll a/b Binding Protein Expression1 Protein Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.
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Yang J., Kim S.R., Lee S.K., Choi H., Jeon J.S., An G.
Plant Sci. 2015 240 79-89
Alanine aminotransferase 1 (OsAlaAT1) plays an essential role in the regulation of starch storage in rice endosperm.
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Okamura M., Hirose T., Hashida Y., Ohsugi R., Aoki N.
Funct. Plant Biol. 2014 42(1) 31-41
Suppression of starch synthesis in rice stems splays tiller angle due to gravitropic insensitivity but does not affect yield.
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Okamura M.a, Hirose T.a b, Hashida Y.a, Yamagishi T.a, Ohsugi R.a, Aoki N.a
Functional Plant Biology 2013 40 1137-1146
Starch reduction in rice stems due to a lack of OsAGPL1 or OsAPL3 decreases grain yield under low irradiance during ripening and modifies plant architecture
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Lu F.H., Park Y.J.
Genet Res (Camb) 2012 94 179-189
Sequence variations in OsAGPase significantly associated with amylose content and viscosity properties in rice (Oryza sativa L.)
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Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH
Theor. Appl. Genet. 2011 122(1) 63-76
Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).
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Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.
Proc. Natl. Acad. Sci. U.S.A. 2009 106(51) 21760-5
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities
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Lee SK, Hwang SK, Han M, Eom JS, Kang HG, Han Y, Choi SB, Cho MH, Bhoo SH, An G, Hahn TR, Okita TW, Jeon JS.
Plant Mol. Biol. 2007 65(4) 531-46.
Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.).
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Pedro Crevillén, Miguel A Ballicora, Angel Mérida, Preiss J., José M Romero
J. Biol. Chem. 2003 278(31) 28508-15
The different large subunit isoforms of Arabidopsis thaliana ADP-glucose pyrophosphorylase confer distinct kinetic and regulatory properties to the heterotetrameric enzyme.
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DB Reference
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Gramene ID
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GR:0101321
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Ontologies
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Gene Ontology
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negative gravitropism( GO:0009959 )
response to gravity( GO:0009629 )
glucose-1-phosphate adenylyltransferase activity( GO:0008878 )
nucleotidyltransferase activity( GO:0016779 )
starch biosynthetic process( GO:0019252 )
biosynthetic process( GO:0009058 )
plastid( GO:0009536 )
response to flooding( GO:0009413 )
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Trait Ontology
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submergence sensitivity( TO:0000286 )
starch content( TO:0000696 )
plant height( TO:0000207 )
tiller number( TO:0000346 )
tiller angle( TO:0000567 )
grain yield( TO:0000396 )
gravity response trait( TO:0002693 )
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Plant Ontology
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endosperm( PO:0009089 )
leaf( PO:0025034 )
mesophyll cell( PO:0004006 )
vascular bundle( PO:0005020 )
anther( PO:0009066 )
leaf sheath( PO:0020104 )
parenchyma cell( PO:0000074 )
stem( PO:0009047 )
seed( PO:0009010 )
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Related Strains
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Phenotype images
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Last updated
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Oct 9, 2025
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Update info.