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Basic Information
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CGSNL Gene Symbol
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AGPL2
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Gene Symbol Synonym
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OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1
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CGSNL Gene Name
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ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2
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Gene Name Synonym
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sativa ADP-glucose pyrophosphorylase large subunit 2, ADP-glucose Pyrophosphorylase large subunit 2, AGPase large subunit 2, AGPase large unit 2, ADP-glucose pyrophosphorylase subunit SH2, GRAIN INCOMPLETE FILLING 2
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Protein Name
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ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2
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Allele
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osagpl2, osagpl2-3, osagpl2-1, gif2
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Chromosome No.
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1
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Explanation
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EC=2.7.7.27 Adenosine diphosphate glucose pyrophosphorylase. AP004317. PO:0009089; endosperm. U66041. AY028314. U87450. HQ679247-HQ679415 (O. sativa and other wild rice species). U70541 (AAB58473). a homolog of maize sh2 gene. GO:2000034: regulation of seed maturation.
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Trait Class
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Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Biochemical character
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK071497
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MSU ID
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LOC_Os01g44220.1
LOC_Os01g44220.2
LOC_Os01g44220.3
LOC_Os01g44220.4
LOC_Os01g44220.5
LOC_Os01g44220.6
LOC_Os01g44220.7
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RAP ID
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Os01g0633100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Liu Z., Li P., Yu L., Hu Y., Du A., Fu X., Wu C., Luo D., Hu B., Dong H., Jiang H., Ma X., Huang W., Yang X., Tu S., Li H.
Int J Mol Sci 2023 24(9)
<i>OsMADS1</i> Regulates Grain Quality, Gene Expressions, and Regulatory Networks of Starch and Storage Protein Metabolisms in Rice.
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Sun C., Wang Y., Yang X., Tang L., Wan C., Liu J., Chen C., Zhang H., He C., Liu C., Wang Q., Zhang K., Zhang W., Yang B., Li S., Zhu J., Sun Y., Li W., Zhou Y., Wang P., Deng X.
Plant Biotechnol. J. 2023 21(3) 621-634
MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.
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Jin S.K., Zhang M.Q., Leng Y.J., Xu L.N., Jia S.W., Wang S.L., Song T., Wang R.A., Yang Q.Q., Tao T., Cai X.L., Gao J.P.
Front Plant Sci 2022 13 905148
<i>OsNAC129</i> Regulates Seed Development and Plant Growth and Participates in the Brassinosteroid Signaling Pathway.
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Cao R., Zhao S., Jiao G., Duan Y., Ma L., Dong N., Lu F., Zhu M., Shao G., Hu S., Sheng Z., Zhang J., Tang S., Wei X., Hu P.
Plant Commun 2022 3(6) 100463
OPAQUE3, encoding a transmembrane bZIP transcription factor, regulates endosperm storage protein and starch biosynthesis in rice.
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Teng Z., Zheng Q., Liu B., Meng S., Zhang J., Ye N.
Int J Mol Sci 2022 23(14)
Moderate Soil Drying-Induced Alternative Splicing Provides a Potential Novel Approach for the Regulation of Grain Filling in Rice Inferior Spikelets.
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Ma B., Zhang L., Gao Q., Wang J., Li X., Wang H., Liu Y., Lin H., Liu J., Wang X., Li Q., Deng Y., Tang W., Luan S., He Z.
Nat. Genet. 2021 53(6) 906-915
A plasma membrane transporter coordinates phosphate reallocation and grain filling in cereals.
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Liu X., Luo J., Li T., Yang H., Wang P., Su L., Zheng Y., Bao C., Zhou C.
Rice (N Y) 2021 14(1) 25
SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other Histone Modifications.
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Wang J., Chen Z., Zhang Q., Meng S., Wei C.
Plant Physiol. 2020 184(4) 1775-1791
The NAC Transcription Factors OsNAC20 and OsNAC26 Regulate Starch and Storage Protein Synthesis.
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Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(42) 26503-26512
Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.
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Hu L., Tu B., Yang W., Yuan H., Li J., Guo L., Zheng L., Chen W., Zhu X., Wang Y., Qin P., Ma B., Li S.
Plant Physiol. 2020 183(3) 1073-1087
Mitochondria-Associated pyruvate kinase Complexes Regulate Grain Filling in Rice.
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Paul P., Dhatt B.K., Miller M., Folsom J.J., Wang Z., Krassovskaya I., Liu K., Sandhu J., Yu H., Zhang C., Obata T., Staswick P., Walia H.
Plant Physiol. 2020 182(2) 933-948
<i>MADS78</i> and <i>MADS79</i> Are Essential Regulators of Early Seed Development in Rice.
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Chen C., He B., Liu X., Ma X., Liu Y., Yao H.Y., Zhang P., Yin J., Wei X., Koh H.J., Yang C., Xue H.W., Fang Z., Qiao Y.
Plant Biotechnol. J. 2019
Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP1) regulates starch biosynthesis and seed development via heterotetramer formation in rice (Oryza sativa L.).
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Xiong Y., Ren Y., Li W., Wu F., Yang W., Huang X., Yao J.
J. Exp. Bot. 2019 70(15) 3765-3780
NF-YC12 is a key multi-functional regulator of accumulation of seed storage substances in rice.
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Pérez L., Soto E., Villorbina G., Bassie L., Medina V., Muñoz P., Capell T., Zhu C., Christou P., Farré G.
Transgenic Res. 2018 27(5) 423-439
CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.
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Long W., Wang Y., Zhu S., Jing W., Wang Y., Ren Y., Tian Y., Liu S., Liu X., Chen L., Wang D., Zhong M., Zhang Y., Hu T., Zhu J., Hao Y., Zhu X., Zhang W., Wang C., Zhang W., Wan J.
Plant Physiol. 2018 177(2) 698-712
FLOURY shrunken endosperm1 Connects Phospholipid Metabolism and Amyloplast Development in Rice.
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Xu E., Chen M., He H., Zhan C., Cheng Y., Zhang H., Wang Z.
Front Plant Sci 2016 7 2006
Proteomic Analysis Reveals Proteins Involved in Seed Imbibition under Salt Stress in Rice.
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Wei X., Jiao G., Lin H., Sheng Z., Shao G., Xie L., Tang S., Xu Q., Hu P.
J Integr Plant Biol 2016
GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.
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Yang J., Kim S.R., Lee S.K., Choi H., Jeon J.S., An G.
Plant Sci. 2015 240 79-89
Alanine aminotransferase 1 (OsAlaAT1) plays an essential role in the regulation of starch storage in rice endosperm.
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Wu Y.P., Pu C.H., Lin H.Y., Huang H.Y., Huang Y.C., Hong C.Y., Chang M.C., Lin Y.R.
Plant Sci. 2015 233 44-52
Three novel alleles of FLOURY ENDOSPERM2 (flo2) confer dull grains with low amylose content in rice.
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Tuncel A., Kawaguchi J., Ihara Y., Matsusaka H., Nishi A., Nakamura T., Kuhara S., Hirakawa H., Nakamura Y., Cakir B., Nagamine A., Okita T.W., Hwang S.K., Satoh H.
Plant Cell Physiol. 2014 55(6) 1169-83
The rice endosperm ADP-glucose pyrophosphorylase large subunit is essential for optimal catalysis and allosteric regulation of the heterotetrameric enzyme.
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Lu F.H., Park Y.J.
Genet Res (Camb) 2012 94 179-189
Sequence variations in OsAGPase significantly associated with amylose content and viscosity properties in rice (Oryza sativa L.)
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Zhang D., Wu J., Zhang Y., Shi C.
Plant Molecular Biology Reporter 2012 30 1303-1312
Phenotypic and Candidate Gene Analysis of a New floury endosperm Mutant (osagpl2-3) in Rice
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Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH
Theor. Appl. Genet. 2011 122(1) 63-76
Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).
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Li C., Wang Y., Liu L., Hu Y., Zhang F., Mergen S., Wang G., Schläppi MR., Chu C.
PLoS Genet. 2011 7(7) e1002196
A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency.
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Yu,G., Olsen,K.M. and Schaal,B.A.
Mol. Biol. Evol. 2011 28(1) 659-671
Molecular Evolution of the Endosperm Starch Synthesis Pathway Genes in Rice (Oryza sativa L.) and Its Wild Ancestor, O. rufipogon L
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Zhang J,Nallamilli BR,Mujahid H,Peng Z
Plant J. 2010 64(4) 604-17
OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa).
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Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.
Proc. Natl. Acad. Sci. U.S.A. 2009 106(51) 21760-5
Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities
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Lee SK, Hwang SK, Han M, Eom JS, Kang HG, Han Y, Choi SB, Cho MH, Bhoo SH, An G, Hahn TR, Okita TW, Jeon JS.
Plant Mol. Biol. 2007 65(4) 531-46.
Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.).
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Sikka,V.K., Choi,S.-B., Kavakli,I.H., Sakulsingharoj,C., Gupta,S., Ito,H. and Okita,T.W.
Plant Sci. 2001 161(3) 461-468
Subcellular compartmentation and allosteric regulation of the rice endosperm ADPglucose pyrophosphorylase
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Chen,M., SanMiguel,P., A.C., Woo,S.S., Zhang,H., Wing,R.A. and Bennetzen,J.L.
Proc. Natl. Acad. Sci. U.S.A. 1997 94(7) 3431-3435
Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes.
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Kavakli,H.I., Wu,Y. and Okita,T.W.
Plant Physiol. 1996 112 1399
DNA Sequence of a Near-Full Length cDNA Encoding the ADPglucose Pyrophosphorylase Large Subunit from Rice (Oryza sativa L) Endosperm (Accession No: U66041)(PGR96-116)
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Chen,M. and Bennetzen,J.L.
Plant Mol. Biol. 1996 32(6) 999-1001
Sequence composition and organization in the Sh2/A1-homologous region of rice.
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TextPresso Search
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Search textpresso for AGPL2
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0101320
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Ontologies
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Gene Ontology
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response to inorganic substance( GO:0010035 )
response to desiccation( GO:0009269 )
glycogen biosynthetic process( GO:0005978 )
glucose-1-phosphate adenylyltransferase activity( GO:0008878 )
biosynthetic process( GO:0009058 )
cytosol( GO:0005829 )
plastid( GO:0009536 )
nucleotidyltransferase activity( GO:0016779 )
starch biosynthetic process( GO:0019252 )
seed maturation( GO:0010431 )
regulation of starch biosynthetic process( GO:0010581 )
response to salt stress( GO:0009651 )
seed development( GO:0048316 )
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Trait Ontology
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starch content( TO:0000696 )
shrunken endosperm( TO:0000100 )
floury endosperm( TO:0000104 )
seed maturation( TO:0002661 )
grain weight( TO:0000590 )
grain yield( TO:0000396 )
seed quality( TO:0000162 )
salt tolerance( TO:0006001 )
seed development trait( TO:0000653 )
drought related trait( TO:0000394 )
1000-seed weight( TO:0000382 )
nutrient sensitivity( TO:0000480 )
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Plant Ontology
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endosperm( PO:0009089 )
seed maturation stage( PO:0007632 )
fruit( PO:0009001 )
seed development stage( PO:0001170 )
seed imbibition stage( PO:0007022 )
seed( PO:0009010 )
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Related Strains
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Phenotype images
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Last updated
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Aug 31, 2023
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