Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SAMDC
Gene Symbol Synonym SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1
CGSNL Gene Name S-ADENOSYLMETHIONINE DECARBOXYLASE
Gene Name Synonym S-adenosylmethionine decarboxylase, S-adenosylmethionine decarboxylase proenzyme, S-adenosylmethionine decarboxylase alpha chain, S-adenosylmethionine decarboxylase beta chain, , S-adenosylmethionine decarboxylase 1
Protein Name S-ADENOSYLMETHIONINE DECARBOXYLASE
Allele
Chromosome No. 4
Explanation LOC_Os04g42095. AF067194. AJ251899, Y07766. EC=4.1.1.50 A2XV58(indica), Q0JC10(japonica). C26568, AU108589. OsSAMDC1 in Chen et al. 2014.
Trait Class Biochemical character
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Expression
Sequence/Locus
cDNA Accession No. AK072162
MSU ID LOC_Os04g42090.1
LOC_Os04g42090.2
LOC_Os04g42090.3
LOC_Os04g42090.4
LOC_Os04g42090.5
LOC_Os04g42095.1
RAP ID Os04g0498600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Saha J., Giri K.
Gene 2017  609  88-103
Molecular phylogenomic study and the role of exogenous spermidine in the metabolic adjustment of endogenous polyamine in two rice cultivars under salt stress.
Chen M.a b, Chen J.a b c, Fang J.a b, Guo Z.a b, Lu S.a b
Plant Cell Tissue Organ Cult. 2014  116  311-322
Down-regulation of S-adenosylmethionine decarboxylase genes results in reduced plant length, pollen viability, and abiotic stress tolerance
Yang J, Yunying C, Zhang H, Liu L, Zhang J.
Planta. 2008  228(1)  137-49
Involvement of polyamines in the post-anthesis development of inferior and superior spikelets in rice.
Roychoudhury A, Basu S, Sarkar SN, Sengupta DN.
Plant Cell Rep. 2008  27(8)  1395-410.
Comparative physiological and molecular responses of a common aromatic indica rice cultivar to high salinity with non-aromatic indica rice cultivars
Yamaguchi,T., Nakayama,K., Hayashi,T., Yazaki,J., Kishimoto,N., Kikuchi,S. and Koike,S.
Biosci. Biotechnol. Biochem. 2004  68(6)  1315-1323
cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5'-Flanking Region.
Franceschetti,M., Hanfrey,C., Scaramagli,S., Torrigiani,P., Bagni,N., Burtin,D. and Michael,A.J.
Biochem. J. 2001  353( Pt 2)  403-409
Characterization of monocot and dicot plant S-adenosyl-l-methionine decarboxylase gene families including identification in the mRNA of a highly conserved pair of upstream overlapping open reading frames.
Li,Z.Y. and Chen,S.Y.
Theor. Appl. Genet. 2000  100(5)  782-788
Differential accumulation of S-adenosylmethionine decarboxylase transcript in rice seedlings in response to salt and drought stresses
TextPresso Search Search textpresso for SAMDC ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology adenosylmethionine decarboxylase activity( GO:0004014 )
spermine biosynthetic process( GO:0006597 )
spermidine biosynthetic process( GO:0008295 )
response to cold( GO:0009409 )
response to water deprivation( GO:0009414 )
pollen development( GO:0009555 )
response to salt stress( GO:0009651 )
seed germination( GO:0009845 )
pollen germination( GO:0009846 )
antioxidant activity( GO:0016209 )
polyamine biosynthetic process( GO:0006596 )
Trait Ontology temperature response trait( TO:0000432 )
plant height( TO:0000207 )
tiller number( TO:0000346 )
grain yield per plant( TO:0000449 )
germination rate( TO:0000430 )
drought tolerance( TO:0000276 )
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 )
pollen fertility( TO:0000421 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jun 15, 2017


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