Gene - Detail
Detail of Gene
Basic Information | |
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CGSNL Gene Symbol | GE1 |
Gene Symbol Synonym | ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES |
CGSNL Gene Name | GIANT EMBRYO 1 |
Gene Name Synonym | giant embryo1, giant embryo 1, giant embryo, big grain2, Cytochrome P450 78A13, GIANT EMBRYO, super-giant embryo |
Protein Name | CYTOCHROME P450 78A13 |
Allele | ge1-1, ge1-2, ge1-3, ge1-4, ge1-5, ge1-6, ge1-s, bg2-D, ge, ge-1, ge-2, ge-3, ge-4, ge-5, ge-6, ge-7, ge-8, ge-9, ge-10, ge, ges |
Chromosome No. | 7 |
Explanation | Induced by chemical mutagen treatment. Embyro size is 2-3 times as large as that of the original variety [440]. In the mature seed, the endosperm is degenerate and a giant embryo is produced due to the enlarged scutellum [708]. PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. LOC_Os07g41240. GO:2000014: regulation of endosperm development. AB780362. |
Trait Class |
Biochemical character
Reproductive organ - panicle Seed - Morphological traits - Embryo Character as QTL - Yield and productivity |
Expression | |
Sequence/Locus | |
cDNA Accession No. |
AK287485
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MSU ID |
LOC_Os07g41240.1
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RAP ID |
Os07g0603700 |
Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
INSD Accession List (Test version) |
Link to INSD Accession List |
Map | |
Locate(cM) | 93.0 |
Link map | Classical linkage map |
References | |
Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018 675 285-300 Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
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Yu H., Ruan B., Wang Z., Ren D., Zhang Y., Leng Y., Zeng D., Hu J., Zhang G., Zhu L., Gao Z., Chen G., Guo L., Chen W., Qian Q.
Front Plant Sci 2017 8 486 Fine Mapping of a Novel defective glume 1 (dg1) Mutant, Which Affects Vegetative and Spikelet Development in Rice.
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Huang X., Peng X., Sun M.X.
New Phytol. 2017 215(3) 1039-1058 OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.
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Xu F., Fang J., Ou S., Gao S., Zhang F., DU L., Xiao Y., Wang H., Sun X., Chu J., Wang G., Chu C.
Plant Cell Environ. 2014 Variations in CYP78A13 coding region influence grain size and yield in rice.
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Nagasawa N., Hibara K.I., Heppard E.P., Vander Velden KA., Luck S., Beatty M., Nagato Y., Sakai H.
Plant J. 2013 75(4) 592-605 GIANT EMBRYO, encoding CYP78A13, affects size balance between embryo and endosperm in rice.
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Hong, S.K., H. Kitano, H. Satoh and Y. Nagato
Development 1996 122 2051-2058. How is embryo size genetically regulated in rice?
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Hong, S.K., T, Aoki, H. Kitano, H. Satoh and Y. Nagato
Dev Genet. 1995 16 298-310. Phenotypic diversity of 188 rice embryo mutants.
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Hong, S.K., T. Aoki, H. Kitano, H. Satoh and Y. Nagato
Plant Sci. 1995 108(2) 165-172. Temperature-sensitive mutation, embryoless 1, affects both embryo and endosperm development in rice.
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TextPresso Search | Search textpresso for GE1 ( Recent references may be retrievable, but without any warranty ) |
DB Reference | |
Gramene ID | GR:0060362 |
Ontologies | |
Gene Ontology |
inflorescence development( GO:0010229 )
embryonic development( GO:0009790 ) anatomical structure morphogenesis( GO:0009653 ) regulation of seed growth( GO:0080113 ) heme binding( GO:0020037 ) oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen( GO:0016705 ) endosperm development( GO:0009960 ) monooxygenase activity( GO:0004497 ) |
Trait Ontology |
embryo related trait( TO:0000064 )
giant embryo( TO:0000113 ) endosperm related trait( TO:0000575 ) seed size( TO:0000391 ) grain yield( TO:0000396 ) grain size( TO:0000397 ) inflorescence development trait( TO:0000621 ) embryo shape( TO:0000193 ) |
Plant Ontology |
endosperm( PO:0009089 )
plant embryo( PO:0009009 ) inflorescence development stage( PO:0001083 ) |
Related Strains | |
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Phenotype images | |
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Last updated | |
Jul 15, 2019 |