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Basic Information
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CGSNL Gene Symbol
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YUCCA9
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Gene Symbol Synonym
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OsYUCCA9, OsYUC9, YUC9
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CGSNL Gene Name
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YUCCA-LIKE GENE 9
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Gene Name Synonym
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(YUCCA-like gene)
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Protein Name
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Allele
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osyuc9, osyuc9-1, osyuc9-2, osyuc9-3
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Chromosome No.
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1
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Explanation
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an orthologue of AtYUCCA. PO:0030104: caryopsis fruit. PO:0030123: panicle inflorescence.
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Trait Class
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Biochemical character
Seed - Morphological traits - Embryo
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK109645
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MSU ID
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LOC_Os01g16714.1
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RAP ID
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Os01g0273800
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Liu N., Li J., Wang C.C., Yang T., Li A., Zeng P., Peng H., Zhang Y., Huang D., Zheng X., Zhang X.Q.
Plants (Basel) 2025 14(17)
Extensin-like Protein OsPEX1 Modulates Grain Filling in Rice.
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Han Y., Zhang C., Sha H., Wang X., Yu Y., Liu J., Zhao G., Wang J., Qiu G., Xu X., Fang J.
Rice (N Y) 2023 16(1) 9
Ubiquitin-conjugating enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.
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Khanday I., Santos-Medellín C., Sundaresan V.
New Phytol. 2023 238(2) 673-687
Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.
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Tonosaki K., Ono A., Kunisada M., Nishino M., Nagata H., Sakamoto S., Kijima S.T., Furuumi H., Nonomura K.I., Sato Y., Ohme-Takagi M., Endo M., Comai L., Hatakeyama K., Kawakatsu T., Kinoshita T.
Plant Cell 2021 33(1) 85-103
Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice.
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Xu X., E Z., Zhang D., Yun Q., Zhou Y., Niu B., Chen C.
Plant Physiol. 2021 185(3) 934-950
OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice.
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Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020 101(6) 1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
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Liu X., Zhou S., Wang W., Ye Y., Zhao Y., Xu Q., Zhou C., Tan F., Cheng S., Zhou D.X.
Plant Cell 2015 27(5) 1428-44
Regulation of histone methylation and reprogramming of gene expression in the rice inflorescence meristem.
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Sarah Russell French, Yousef Abu-Zaitoon, Md Myn Uddin, Bennett K., Heather M Nonhebel
Plants (Basel) 2014 3(1) 95-112
Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.
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Abu-Zaitoon YM.
Appl. Biochem. Biotechnol. 2014 172(5) 2480-95
Phylogenetic analysis of putative genes involved in the tryptophan-dependent pathway of auxin biosynthesis in rice.
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Abu-Zaitoon YM., Bennett K., Normanly J., Nonhebel H.M.
Physiol Plant 2012 146(4) 487-99
A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA.
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Fujino,K., Matsuda,Y., Ozawa,K., Nishimura,T., Koshiba,T., Fraaije,M.W. and Sekiguchi,H.
Mol. Genet. Genomics 2008 279(5) 499-507
NARROW LEAF 7 controls leaf shape mediated by auxin in rice
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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somatic embryogenesis( GO:0010262 )
seed development( GO:0048316 )
flavin-containing monooxygenase activity( GO:0004499 )
auxin biosynthetic process( GO:0009851 )
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Trait Ontology
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auxin content( TO:0002672 )
seed development trait( TO:0000653 )
chalky endosperm( TO:0000266 )
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Plant Ontology
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plant embryo( PO:0009009 )
endosperm( PO:0009089 )
shoot system( PO:0009006 )
root( PO:0009005 )
stem( PO:0009047 )
inflorescence( PO:0009049 )
seed development stage( PO:0001170 )
plant zygote( PO:0000423 )
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Related Strains
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Phenotype images
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Last updated
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Jan 19, 2026
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Update info.