遺伝子 - 詳細

検索リストダウンロード trait classification

詳細 - 遺伝子

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Basic Information

CGSNL 遺伝子シンボル

RFS

遺伝子シンボルシノニム

rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32

CGSNL 遺伝子名

ROLLED FINE STRIPED LEAF

遺伝子名シノニム

霜降り巻葉, Rolled Fine Striped, CHD-related gene 729, Chromatin Remodeling 4, crown rootless6, crown rootless 6, PICKLE RELATED1, Plant homeo-domain finger protein 32, PHD finger protein 32, chromatin remodeling factor 729

タンパク質名

対立遺伝子

rfs, rfs-1, rfs-2, chr729, Oschr4, CHR729-1, CHR729-2, CHR729-3, Oschr4-5, Oschr4-6, Oschr4-7

染色体番号

解説

BGIOSGA024271. B8B6D8 (indica). MK765112, MK765113. a CHR4/Mi-2-Like Chromatin Remodeling Factor. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage. GO:0072593: reactive oxygen species metabolic process. GO:1904821: chloroplast disassembly. TO:0006060: leaf chlorosis. GO:0036123: histone H3-K9 dimethylation. chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein. TO:0006064: rolled leaf. GO:1904276: regulation of wax biosynthetic process. GO:0106185: histone H3-K37 methylation.

形質クラス

着色 - 葉緑素
栄養器官 - 葉
生殖器官 - 出穂期
QTLの特性 - 収穫と生産性
生殖器官 - 穂
栄養器官 - 稈
生殖器官 - 受粉、受精、稔性
耐性、抵抗性 - 病気抵抗性
耐性、抵抗性 - ストレス耐性

発現

Sequence/Locus

cDNA Accession No.

AK103233

MSU ID

LOC_Os07g31450.1

RAP ID

Os07g0497100

Links

Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )

INSD Accession List
(Test version)

マップ

位置情報(cM)

66.0

リンケージマップ

Classical linkage map

文献

Guo M., Zhao H., He Z., Zhang W., She Z., Mohammadi M.A., Shi C., Yan M., Tian D., Qin Y.
Front Plant Sci 2022 13 910663

Comparative Expression Profiling of Snf2 Family Genes During Reproductive Development and Stress Responses in Rice.

Yoon H., Shim Y., Yoo S.C., Kang K., Paek N.C.
Int J Mol Sci 2021 22(3)

The Rice CHD3/Mi-2 Chromatin Remodeling Factor Rolled Fine Striped Promotes Flowering Independent of Photoperiod.

Waziri A., Singh D.K., Sharma T., Chatterjee S., Purty R.S.
Noncoding RNA Res 2020 5(4) 191-200

Genome-wide analysis of PHD finger gene family and identification of potential miRNA and their PHD finger gene specific targets in <i>Oryza sativa</i> indica.

Zhao Y., Qiang C., Wang X., Chen Y., Deng J., Jiang C., Sun X., Chen H., Li J., Piao W., Zhu X., Zhang Z., Zhang H., Li Z., Li J.
Sci Rep 2019 9(1) 2541

New alleles for chlorophyll content and stay-green traits revealed by a genome wide association study in rice (Oryza sativa).

Guo T., Wang D., Fang J., Zhao J., Yuan S., Xiao L., Li X.
Int J Mol Sci 2019 20(10)

Mutations in the Rice <i>OsCHR4</i> Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax.

Cho S.H., Lee C.H., Gi E., Yim Y., Koh H.J., Kang K., Paek N.C.
Front Plant Sci 2018 9 364

The Rice Rolled Fine Striped (RFS) CHD3/Mi-2 Chromatin Remodeling Factor Epigenetically Regulates Genes Involved in Oxidative Stress Responses During Leaf Development.

Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018 9 1528

Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.

Wang Y., Wang D., Gan T., Liu L., Long W., Wang Y., Niu M., Li X., Zheng M., Jiang L., Wan J.
Plant Physiol. Biochem. 2016 105 185-194

CRL6, a member of the CHD protein family, is required for crown root development in rice.

Chen X., Liu X., Zhao Y., Zhou D.X.
Sci Rep 2015 5 13251

Histone H3K4me3 and H3K27me3 regulatory genes control stable transmission of an epimutation in rice.

Zhao C., Xu J., Chen Y., Mao C., Zhang S., Bai Y., Jiang D., Wu P.
Planta 2012 236(4) 1165-76

Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll.

Hu Y., Liu D., Zhong X., Zhang C., Zhang Q., Zhou D.X.
Proc. Natl. Acad. Sci. U.S.A. 2012 109(15) 5773-8

CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome.

Kumamaru, T. and H. Satoh
RGN 1995 12 208-209.

Linkage analysis of genes, ge (giant embryo) and esp-1 (endosperm storage protein-1) on chromosome 7.

Kishimoto, N., E. Shimosaka, S. Matsuura and A. Saito
RGN 1992 9 118-124.

A current RFLP linkage map of rice Alignment of the molecular map with the classical map.

Maekawa, M., I. Takamure and T. Kinoshita
Rice Genetics. II. IRRI, Manila, Philippines. 1991 111-120.

Gene mapping of some morphological traits and chlorophyll deficiency in rice.

Satoh, H. and N. Iwata
Japan. J. Breed. 1990 40(Suppl. 2) 268-269.

Linkage analysis in rice. On three mutant loci for endosperm properties, ge(giant embryo), du-4(dull endosperm-4) and flo-1(floury endosperm-1).

Iwata, N. and T. Omura
Jpn. J. Genet. 1984 59(3) 199-204.

Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.

Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1981 31(Suppl. 1) 66-67.

Linkage analysis by use of trisomics in rice (Oryza sativa L. ). IV. Linkage groups locating on chromosomes 2 and 10.

TextPresso Search

Search textpresso for RFS ( Recent references may be retrievable, but without any warranty )

DB Reference

Gramene ID

GR:0060753

オントロジー

Gene Ontology

metal ion binding( GO:0046872 )
defense response to fungus( GO:0050832 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
histone methylation( GO:0016571 )
circadian rhythm( GO:0007623 )
vegetative to reproductive phase transition( GO:0010228 )
chlorophyll biosynthetic process( GO:0015995 )
multicellular organismal development( GO:0007275 )
histone modification( GO:0016570 )
root development( GO:0048364 )
pollen development( GO:0009555 )
regulation of gene expression, epigenetic( GO:0040029 )
leaf development( GO:0048366 )
ATP binding( GO:0005524 )
chloroplast organization( GO:0009658 )
zinc ion binding( GO:0008270 )
helicase activity( GO:0004386 )
DNA binding( GO:0003677 )
wax biosynthetic process( GO:0010025 )
regulation of DNA methylation( GO:0044030 )

Trait Ontology

leaf shape( TO:0000492 )
variegated leaf( TO:0000069 )
leaf rolling( TO:0000085 )
chloroplast development trait( TO:0002715 )
root development trait( TO:0000656 )
chlorophyll content( TO:0000495 )
carotenoid content( TO:0000496 )
leaf color( TO:0000326 )
hydrogen peroxide content( TO:0000605 )
leaf width( TO:0000370 )
flowering time( TO:0002616 )
grain yield( TO:0000396 )
yield trait( TO:0000371 )
plant height( TO:0000207 )
fertility related trait( TO:0000420 )
panicle length( TO:0000040 )
panicle number( TO:0000152 )
primary branch number( TO:0000547 )
secondary branch number( TO:0000557 )
filled grain number( TO:0000447 )
spikelet fertility( TO:0000180 )
grain weight( TO:0000590 )
grain yield per plant( TO:0000449 )
grain number( TO:0002759 )
salt tolerance( TO:0006001 )
drought tolerance( TO:0000276 )
blast disease( TO:0000074 )

Plant Ontology

vascular leaf( PO:0009025 )
leaf development stage( PO:0001050 )
pollen development stage( PO:0001007 )
root development stage( PO:0007520 )
vascular tissue development stage( PO:0025424 )
portion of vascular tissue( PO:0009015 )
mesophyll cell( PO:0004006 )
vascular bundle( PO:0005020 )

Rice Database Oryzabase

遺伝子 - 詳細

詳細 - 遺伝子