Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol RFS
Gene Symbol Synonym rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32
Gene Name Synonym rolled fine striped leaf, curl leaf-7, Rolled Fine Striped, CHD-related gene 729, Chromatin Remodeling 4, crown rootless6, crown rootless 6, PICKLE RELATED1, Plant homeo-domain finger protein 32, PHD finger protein 32
Protein Name
Allele rfs-1, rfs-2, chr729, Oschr4, CHR729-1, CHR729-2, CHR729-3, Oschr4-5, Oschr4-6, Oschr4-7
Chromosome No. 7
Explanation BGIOSGA024271. B8B6D8 (indica). MK765112, MK765113. a CHR4/Mi-2-Like Chromatin Remodeling Factor. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage. GO:0072593: reactive oxygen species metabolic process. GO:1904821: chloroplast disassembly. TO:0006060: leaf chlorosis. GO:0036123: histone H3-K9 dimethylation. chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein. TO:0006064: rolled leaf. GO:1904276: regulation of wax biosynthetic process.
Trait Class Vegetative organ - Leaf
Coloration - Chlorophyll
cDNA Accession No. AK103233
MSU ID LOC_Os07g31450.1
RAP ID Os07g0497100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Locate(cM) 66.0
Link map Classical linkage map
Waziri A., Singh D.K., Sharma T., Chatterjee S., Purty R.S.
Noncoding RNA Res 2020  5(4)  191-200
Genome-wide analysis of PHD finger gene family and identification of potential miRNA and their PHD finger gene specific targets in <i>Oryza sativa</i> indica.
Guo T., Wang D., Fang J., Zhao J., Yuan S., Xiao L., Li X.
Int J Mol Sci 2019  20(10) 
Mutations in the Rice <i>OsCHR4</i> Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax.
Zhao Y., Qiang C., Wang X., Chen Y., Deng J., Jiang C., Sun X., Chen H., Li J., Piao W., Zhu X., Zhang Z., Zhang H., Li Z., Li J.
Sci Rep 2019  9(1)  2541
New alleles for chlorophyll content and stay-green traits revealed by a genome wide association study in rice (Oryza sativa).
Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018  9  1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
Cho S.H., Lee C.H., Gi E., Yim Y., Koh H.J., Kang K., Paek N.C.
Front Plant Sci 2018  9  364
The Rice Rolled Fine Striped (RFS) CHD3/Mi-2 Chromatin Remodeling Factor Epigenetically Regulates Genes Involved in Oxidative Stress Responses During Leaf Development.
Wang Y., Wang D., Gan T., Liu L., Long W., Wang Y., Niu M., Li X., Zheng M., Jiang L., Wan J.
Plant Physiol. Biochem. 2016  105  185-194
CRL6, a member of the CHD protein family, is required for crown root development in rice.
Chen X., Liu X., Zhao Y., Zhou D.X.
Sci Rep 2015  5  13251
Histone H3K4me3 and H3K27me3 regulatory genes control stable transmission of an epimutation in rice.
Zhao C., Xu J., Chen Y., Mao C., Zhang S., Bai Y., Jiang D., Wu P.
Planta 2012  236(4)  1165-76
Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll.
Hu Y., Liu D., Zhong X., Zhang C., Zhang Q., Zhou D.X.
Proc. Natl. Acad. Sci. U.S.A. 2012  109(15)  5773-8
CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome.
Kumamaru, T. and H. Satoh
RGN 1995  12  208-209.
Linkage analysis of genes, ge (giant embryo) and esp-1 (endosperm storage protein-1) on chromosome 7.
Kishimoto, N., E. Shimosaka, S. Matsuura and A. Saito
RGN 1992  9  118-124.
A current RFLP linkage map of rice Alignment of the molecular map with the classical map.
Maekawa, M., I. Takamure and T. Kinoshita
Rice Genetics. II. IRRI, Manila, Philippines. 1991    111-120.
Gene mapping of some morphological traits and chlorophyll deficiency in rice.
Satoh, H. and N. Iwata
Japan. J. Breed. 1990  40(Suppl. 2)  268-269.
Linkage analysis in rice. On three mutant loci for endosperm properties, ge(giant embryo), du-4(dull endosperm-4) and flo-1(floury endosperm-1).
Iwata, N. and T. Omura
Jpn. J. Genet. 1984  59(3)  199-204.
Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1981  31(Suppl. 1)  66-67.
Linkage analysis by use of trisomics in rice (Oryza sativa L. ). IV. Linkage groups locating on chromosomes 2 and 10.
TextPresso Search Search textpresso for RFS ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060753
Gene Ontology chlorophyll biosynthetic process( GO:0015995 )
multicellular organismal development( GO:0007275 )
histone modification( GO:0016570 )
root development( GO:0048364 )
pollen development( GO:0009555 )
regulation of gene expression, epigenetic( GO:0040029 )
leaf development( GO:0048366 )
ATP binding( GO:0005524 )
chloroplast organization( GO:0009658 )
zinc ion binding( GO:0008270 )
helicase activity( GO:0004386 )
DNA binding( GO:0003677 )
wax biosynthetic process( GO:0010025 )
regulation of DNA methylation( GO:0044030 )
Trait Ontology leaf shape( TO:0000492 )
variegated leaf( TO:0000069 )
leaf rolling( TO:0000085 )
chloroplast development trait( TO:0002715 )
root development trait( TO:0000656 )
chlorophyll content( TO:0000495 )
carotenoid content( TO:0000496 )
leaf color( TO:0000326 )
hydrogen peroxide content( TO:0000605 )
leaf width( TO:0000370 )
Plant Ontology vascular leaf( PO:0009025 )
leaf development stage( PO:0001050 )
pollen development stage( PO:0001007 )
root development stage( PO:0007520 )
vascular tissue development stage( PO:0025424 )
portion of vascular tissue( PO:0009015 )
mesophyll cell( PO:0004006 )
vascular bundle( PO:0005020 )
Related Strains
Stocks for Genes 1
F Lines 4
Backcross Fn Generation (T65) 2
Phenotype images
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Photo from A. Yoshimura
Last updated
Jan 31, 2021