遺伝子 - 詳細

詳細 - 遺伝子

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Basic Information
CGSNL 遺伝子シンボル RC
遺伝子シンボルシノニム Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
CGSNL 遺伝子名 BROWN PERICARP AND SEED COAT
遺伝子名シノニム 種皮褐色 
タンパク質名 bHLH TRANSCRIPTION FACTOR 17
対立遺伝子 Rc-s, Rc-g, rc, rc-g1, SD7-1D, SD7-1d
染色体番号 7
解説 果皮および種皮に、褐色の地色に不規則な赤褐色の斑を生ずる。Rdと共存すると、赤褐色の色を果皮全体に広げる。Basic Helix-Loop-Helix protein, bHLH TRANSCRIPTION FACTOR. AB247503, AB250059. DQ204735, DQ204736 (Plant Cell 18 (2), 283-294 (2006)). PO:0009088; seed coat ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. DQ885795-DQ885823 and DQ902346-DQ902352. GU261543-GU261673 (Oryza sativa and wild rice species). HM749735-HM749743 (Oryza barthii and Oryza glaberrima). JF303048-JF303056, JF303060-JF303062. O. rufipogon and O. glaberrima: JF303057-JF303059. a homologue of Arabidopsis transcription factor GL3.
形質クラス 着色 - アントシアニン
着色 - その他
種子 - 生理的な特色 - 休眠性
発現
Sequence/Locus
cDNA Accession No. AB247503
MSU ID LOC_Os07g11020.1
RAP ID Os07g0211500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
マップ
位置情報(cM) 52.0
リンケージマップ Classical linkage map
文献
Lu Y., Xu Y., Li N.
Rice (N Y) 2022  15(1)  11
Early Domestication History of Asian Rice Revealed by Mutations and Genome-Wide Analysis of Gene Genealogies.
Yang X., Wang J., Xia X., Zhang Z., He J., Nong B., Luo T., Feng R., Wu Y., Pan Y., Xiong F., Zeng Y., Chen C., Guo H., Xu Z., Li D., Deng G.
Plant J. 2021  107(1)  198-214
OsTTG1, a WD40 repeat gene, regulates anthocyanin biosynthesis in rice.
Zheng K., Wang X., Wang Y., Wang S.
BMC Plant Biol. 2021  21(1)  234
Conserved and non-conserved functions of the rice homologs of the Arabidopsis trichome initiation-regulating MBW complex proteins.
Qiao W., Wang Y., Xu R., Yang Z., Sun Y., Su L., Zhang L., Wang J., Huang J., Zheng X., Liu S., Tian Y., Chen L., Liu X., Lan J., Yang Q.
Theor. Appl. Genet. 2021  134(5)  1531-1543
A functional chromogen gene C from wild rice is involved in a different anthocyanin biosynthesis pathway in indica and japonica.
Wang W., Mauleon R., Hu Z., Chebotarov D., Tai S., Wu Z., Li M., Zheng T., Fuentes R.R., Zhang F., Mansueto L., Copetti D., Sanciangco M., Palis K.C., Xu J., Sun C., Fu B., Zhang H., Gao Y., Zhao X., Shen F., Cui X., Yu H., Li Z., Chen M., Detras J., Zhou Y., Zhang X., Zhao Y., Kudrna D., Wang C., Li R., Jia B., Lu J., He X., Dong Z., Xu J., Li Y., Wang M., Shi J., Li J., Zhang D., Lee S., Hu W., Poliakov A., Dubchak I., Ulat V.J., Borja F.N., Mendoza J.R., Ali J., Li J., Gao Q., Niu Y., Yue Z., Naredo M.E.B., Talag J., Wang X., Li J., Fang X., Yin Y., Glaszmann J.C., Zhang J., Li J., Hamilton R.S., Wing R.A., Ruan J., Zhang G., Wei C., Alexandrov N., McNally K.L., Li Z., Leung H.
Nature 2018  557(7703)  43-49
Genomic variation in 3,010 diverse accessions of Asian cultivated rice.
Civáň P., Brown T.A.
Genet. Resour. Crop Evol. 2017  64(6)  1125-1132
Origin of rice (Oryza sativa L.) domestication genes.
Li L.F., Li Y.L., Jia Y., Caicedo A.L., Olsen K.M.
Nat. Genet. 2017  49(5)  811-814
Signatures of adaptation in the weedy rice genome.
Zheng K., Tian H., Hu Q., Guo H., Yang L., Cai L., Wang X., Liu B., Wang S.
Sci Rep 2016  6  19254
Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.
Purugganan M.D.
Nat. Genet. 2014  46(9)  931-2
An evolutionary genomic tale of two rice species.
Huang X., Zhao Y., Wei X., Li C., Wang A., Zhao Q., Li W., Guo Y., Deng L., Zhu C., Fan D., Lu Y., Weng Q., Liu K., Zhou T., Jing Y., Si L., Dong G., Huang T., Lu T., Feng Q., Qian Q., Li J., Han B.
Nat. Genet. 2012  44(1)  32-9
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.
Gu,X.Y., Foley,M.E., Horvath,D.P., Anderson,J.V., Feng,J., Zhang,L., Mowry,C.R., Ye,H., Suttle,J.C., Kadowaki,K.I. and Chen,Z.
Genetics 2011  189(4)  1515-1524
Association Between Seed Dormancy and Pericarp Color Is Controlled by a Pleiotropic Gene That Regulates Abscisic Acid and Flavonoid Synthesis in Weedy Red Rice
Gross,B.L., Steffen,F.T. and Olsen,K.M.
J. Evol. Biol. 2010  23(12)  2747-2753
The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene
Gross,B.L., Reagon,M., Hsu,S.C., Caicedo,A.L., Jia,Y. and Olsen,K.M.
Mol. Ecol. 2010  19(16)  3380-3393
Seeing red: the origin of grain pigmentation in US weedy rice
Konishi S,Ebana K,Izawa T
Plant Cell Physiol. 2008  49  1283-93
Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars.
Brooks SA,Yan W,Jackson AK,Deren CW
Theor. Appl. Genet. 2008  117  575-80
A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g.
Sweeney,M.T., Thomson,M.J., Cho,Y.G., Park,Y.J., Williamson,S.H., Bustamante,C.D. and McCouch,S.R.
PLoS Genet. 2007  3 (8)  E133
Global dissemination of a single mutation conferring white pericarp in rice
Furukawa,T., Maekawa,M., Oki,T., Suda,I., Iida,S., Shimada,H., Takamure,I. and Kadowaki,K.I.
Plant J. 2007  49(1)  91-102
The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp.
Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D.
Plant Physiol. 2006  141(4)  1167-84
Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.
Sweeney,M.T., Thomson,M.J., Pfeil,B.E. and McCouch,S.
Plant Cell 2006  18  283-294
Caught red-handed: rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice.
Yu, Z.H., S.R. McCouch, T. Kinoshita, S. Sato and S.D. Tanksley
Genome 1995  38  566-574.
Association of morphological and RFLP markers in rice (Oryza sativa L. ).
Eiguchi, M. and Y. Sano
RGN 1995  12  187-189.
Evolutionary significance of chromosome 7 in an annual type of wild rice.
Lin, S.Y., Y. Nagamura, N. Kurata, M. Yano, Y. Minobe and T. Sasaki
RGN 1994  11  108-109.
DNA markers tightly linked to genes, Ph, alk and Rc.
Tanksley, S.D., T.M. Fulton and S.R. McCouch
Genetic Maps, Locus Maps of Complex Genomes, Plants. S.J. O'Brien ed. Cold Spring Harbour Lab. Press. 1993  Book 6  61-79.
Linkage map of rice (Oryza sativa) (2N=24).
Yu, Z.H., T. Kinoshita, S. Sato and S.D. Tanksley
RGN 1992  9  116-118.
Morphological and RFLP markers are associated in rice.
Satoh, H. and N. Iwata
Japan. J. Breed. 1990  40(Suppl. 2)  268-269.
Linkage analysis in rice. On three mutant loci for endosperm properties, ge(giant embryo), du-4(dull endosperm-4) and flo-1(floury endosperm-1).
Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984    187-274.
Gene analysis and linkage map.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1981  31(Suppl. 1)  66-67.
Linkage analysis by use of trisomics in rice (Oryza sativa L. ). IV. Linkage groups locating on chromosomes 2 and 10.
Takahashi, M., T. Mori, T. Kinoshita and K. Mori
Res. Bull. Univ. Farm Hokkaido Univ. 1972  18  47-53.
Genic constitution on red coloration in rice grains of an Indian variety, Surjamkhi. (Genetical studies of rice plant, L.).
Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963  53(1)  72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
Nagao, S.
Adv. Genet. 1951  4  181-212.
Genic analysis and linkage relationship of characters in rice.
TextPresso Search Search textpresso for RC ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060724
オントロジー
Gene Ontology flavonoid metabolic process( GO:0009812 )
proanthocyanidin biosynthetic process( GO:0010023 )
anthocyanin metabolic process( GO:0046283 )
Trait Ontology seed coat color( TO:0000190 )
pericarp color( TO:0000707 )
endosperm color( TO:0000487 )
Plant Ontology seed coat( PO:0009088 )
endosperm( PO:0009089 )
関連系統
遺伝子保存系統 1
標識遺伝子集積系統 3
準同質標識遺伝子系統 1
形質画像
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提供元: 吉村 淳
更新日
2023-02-28 14:29:22.758


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