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Basic Information
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CGSNL Gene Symbol
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GIF1
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Gene Symbol Synonym
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gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2
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CGSNL Gene Name
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GRAIN INCOMPLETE FILLING 1
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Gene Name Synonym
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grain incomplete filling 1, "Beta-fructofuranosidase, insoluble isoenzyme 2", Sucrose hydrolase 2, Invertase 2, Cell wall beta-fructosidase 2, cell-wall invertase 2, White Belly 1
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Protein Name
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CELL WALL BETA-FRUCTOSIDASE 2
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Allele
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gif1, wb1
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Chromosome No.
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4
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Explanation
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EC=3.2.1.26 AY578159. AY340072. Q01IS7(indica). Q0JDC5(japonica). GRO:0007141; C-embryo stage. GU797900-GU797949 (O. sativa and other wild rice species). AY575549. EU095553-EU095596 (O. sativa and O. rufipogon). GO:2000014: regulation of endosperm development. TO:0001068: processing quality trait.
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Trait Class
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Character as QTL - Yield and productivity
Seed - Morphological traits
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Taste
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK072276
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MSU ID
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LOC_Os04g33740.1
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RAP ID
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Os04g0413500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Li J., Zhao T., Chen L., Chen H., Luo D., Chen C., Miao Y., Liu D.
BMC Plant Biol. 2022 22(1) 368
Artemisia argyi allelopathy: a generalist compromises hormone balance, element absorption, and photosynthesis of receptor plants.
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Zhang H., Jang S.G., Lar S.M., Lee A.R., Cao F.Y., Seo J., Kwon S.W.
Plants (Basel) 2021 10(6)
Genome-Wide Identification and Genetic Variations of the starch synthase Gene Family in Rice.
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Tonosaki K., Ono A., Kunisada M., Nishino M., Nagata H., Sakamoto S., Kijima S.T., Furuumi H., Nonomura K.I., Sato Y., Ohme-Takagi M., Endo M., Comai L., Hatakeyama K., Kawakatsu T., Kinoshita T.
Plant Cell 2021 33(1) 85-103
Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice.
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Zha K., Xie H., Ge M., Wang Z., Wang Y., Si W., Gu L.
Int J Mol Sci 2019 20(3)
Expression of Maize MADS Transcription Factor <i>ZmES22</i> Negatively Modulates Starch Accumulation in Rice Endosperm.
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Wang H., Zhang Y., Sun L., Xu P., Tu R., Meng S., Wu W., Anis G.B., Hussain K., Riaz A., Chen D., Cao L., Cheng S., Shen X.
Int J Mol Sci 2018 19(8)
<i>WB1</i>, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.
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Du Y., He W., Deng C., Chen X., Gou L., Zhu F., Guo W., Zhang J., Wang T.
PLoS ONE 2016 11(3) e0150458
Flowering-Related RING Protein 1 (FRRP1) Regulates flowering time and Yield Potential by Affecting histone H2B Monoubiquitination in Rice (Oryza Sativa).
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Xia K., Ou X., Tang H., Wang R., Wu P., Jia Y., Wei X., Xu X., Kang S.H., Kim S.K., Zhang M.
New Phytol. 2015
Rice microRNA osa-miR1848 targets the obtusifoliol 14alpha-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.
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Sarah Russell French, Yousef Abu-Zaitoon, Md Myn Uddin, Bennett K., Heather M Nonhebel
Plants (Basel) 2014 3(1) 95-112
Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.
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Suzuki K., Aoki N., Matsumura H., Okamura M., Ohsugi R., Shimono H.
Plant Cell Environ. 2014
Cooling water before panicle initiation increases chilling-induced male sterility and disables chilling-induced expression of genes encoding OsFKBP65 and heat shock proteins in rice spikelets.
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Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013 16(2) 213-20
Genes offering the potential for designing yield-related traits in rice.
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Wang,E., Xun,X., Zhang,L., Zhang,H., Lin,L., Wang,Q., Li,Q., Ge,S., Lu,B.R., Wang,W. and He,Z.
BMC Evol. Biol. 2010 10 108
Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication
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Wang,E., Wang,J., Zhu,X., Hao,W., Wang,L., Li,Q., Zhang,L., He,W., Lu,B., Lin,H., Ma,H., Zhang,G. and He,Z.
Nat Genet 2008 40(11) 1370-1374
Control of rice grain-filling and yield by a gene with a potential signature of domestication
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Ji,X., Van den Ende,W., Van Laere,A., Cheng,S. and Bennett,J.
J. Mol. Evol. 2005 60(5) 615-634
Structure, evolution, and expression of the two invertase gene families of rice.
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Cho,J.I., Lee,S.K., Ko,S., Kim,H.K., Jun,S.H., Lee,Y.H., Bhoo,S.H., Lee,K.W., An,G., Hahn,T.R. and Jeon,J.S.
Plant Cell Rep. 2005 24(4) 225-236
Molecular cloning and expression analysis of the cell-wall invertase gene family in rice (Oryza sativa L.).
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TextPresso Search
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Search textpresso for GIF1
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0080062
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Ontologies
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Gene Ontology
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response to other organism( GO:0051707 )
beta-fructofuranosidase activity( GO:0004564 )
sucrose alpha-glucosidase activity( GO:0004575 )
cell wall( GO:0005618 )
carbohydrate metabolic process( GO:0005975 )
sucrose biosynthetic process( GO:0005986 )
sucrose catabolic process( GO:0005987 )
hydrolase activity( GO:0016787 )
apoplast( GO:0048046 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
endosperm development( GO:0009960 )
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Trait Ontology
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glucose content( TO:0000300 )
invertase activity( TO:0000311 )
grain yield( TO:0000396 )
fructose content( TO:0006005 )
amylose content( TO:0000196 )
seed maturation( TO:0002661 )
sucrose content( TO:0000328 )
seed size( TO:0000391 )
grain weight( TO:0000590 )
amylopectin content( TO:0000097 )
endosperm color( TO:0000487 )
endosperm related trait( TO:0000575 )
chalky endosperm( TO:0000266 )
1000-dehulled grain weight( TO:0000592 )
spikelet number( TO:0000456 )
filled grain number( TO:0000447 )
seed set percent( TO:0000455 )
glume color( TO:0000221 )
starch grain shape( TO:0002656 )
seed length( TO:0000146 )
seed width( TO:0000149 )
seed thickness( TO:0000304 )
starch content( TO:0000696 )
seed quality( TO:0000162 )
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Plant Ontology
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root tip( PO:0000025 )
carpel vascular system( PO:0005019 )
inflorescence internode( PO:0006326 )
pericarp( PO:0009084 )
endosperm( PO:0009089 )
endosperm development stage( PO:0007633 )
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Related Strains
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Phenotype images
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Last updated
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Dec 5, 2022
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