Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol GIF1
Gene Symbol Synonym gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2
Gene Name Synonym grain incomplete filling 1, "Beta-fructofuranosidase, insoluble isoenzyme 2", Sucrose hydrolase 2, Invertase 2, Cell wall beta-fructosidase 2, cell-wall invertase 2, White Belly 1
Allele gif1, wb1
Chromosome No. 4
Explanation EC= AY578159. AY340072. Q01IS7(indica). Q0JDC5(japonica). GRO:0007141; C-embryo stage. GU797900-GU797949 (O. sativa and other wild rice species). AY575549. EU095553-EU095596 (O. sativa and O. rufipogon). GO:2000014: regulation of endosperm development. TO:0001068: processing quality trait.
Trait Class Character as QTL - Yield and productivity
Seed - Morphological traits
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Taste
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK072276
MSU ID LOC_Os04g33740.1
RAP ID Os04g0413500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Li J., Zhao T., Chen L., Chen H., Luo D., Chen C., Miao Y., Liu D.
BMC Plant Biol. 2022  22(1)  368
Artemisia argyi allelopathy: a generalist compromises hormone balance, element absorption, and photosynthesis of receptor plants.
Zhang H., Jang S.G., Lar S.M., Lee A.R., Cao F.Y., Seo J., Kwon S.W.
Plants (Basel) 2021  10(6) 
Genome-Wide Identification and Genetic Variations of the starch synthase Gene Family in Rice.
Tonosaki K., Ono A., Kunisada M., Nishino M., Nagata H., Sakamoto S., Kijima S.T., Furuumi H., Nonomura K.I., Sato Y., Ohme-Takagi M., Endo M., Comai L., Hatakeyama K., Kawakatsu T., Kinoshita T.
Plant Cell 2021  33(1)  85-103
Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice.
Zha K., Xie H., Ge M., Wang Z., Wang Y., Si W., Gu L.
Int J Mol Sci 2019  20(3) 
Expression of Maize MADS Transcription Factor <i>ZmES22</i> Negatively Modulates Starch Accumulation in Rice Endosperm.
Wang H., Zhang Y., Sun L., Xu P., Tu R., Meng S., Wu W., Anis G.B., Hussain K., Riaz A., Chen D., Cao L., Cheng S., Shen X.
Int J Mol Sci 2018  19(8) 
<i>WB1</i>, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.
Du Y., He W., Deng C., Chen X., Gou L., Zhu F., Guo W., Zhang J., Wang T.
PLoS ONE 2016  11(3)  e0150458
Flowering-Related RING Protein 1 (FRRP1) Regulates flowering time and Yield Potential by Affecting histone H2B Monoubiquitination in Rice (Oryza Sativa).
Xia K., Ou X., Tang H., Wang R., Wu P., Jia Y., Wei X., Xu X., Kang S.H., Kim S.K., Zhang M.
New Phytol. 2015   
Rice microRNA osa-miR1848 targets the obtusifoliol 14alpha-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.
Sarah Russell French, Yousef Abu-Zaitoon, Md Myn Uddin, Bennett K., Heather M Nonhebel
Plants (Basel) 2014  3(1)  95-112
Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.
Suzuki K., Aoki N., Matsumura H., Okamura M., Ohsugi R., Shimono H.
Plant Cell Environ. 2014   
Cooling water before panicle initiation increases chilling-induced male sterility and disables chilling-induced expression of genes encoding OsFKBP65 and heat shock proteins in rice spikelets.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Wang,E., Xun,X., Zhang,L., Zhang,H., Lin,L., Wang,Q., Li,Q., Ge,S., Lu,B.R., Wang,W. and He,Z.
BMC Evol. Biol. 2010  10  108
Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication
Wang,E., Wang,J., Zhu,X., Hao,W., Wang,L., Li,Q., Zhang,L., He,W., Lu,B., Lin,H., Ma,H., Zhang,G. and He,Z.
Nat Genet 2008  40(11)  1370-1374
Control of rice grain-filling and yield by a gene with a potential signature of domestication
Ji,X., Van den Ende,W., Van Laere,A., Cheng,S. and Bennett,J.
J. Mol. Evol. 2005  60(5)  615-634
Structure, evolution, and expression of the two invertase gene families of rice.
Cho,J.I., Lee,S.K., Ko,S., Kim,H.K., Jun,S.H., Lee,Y.H., Bhoo,S.H., Lee,K.W., An,G., Hahn,T.R. and Jeon,J.S.
Plant Cell Rep. 2005  24(4)  225-236
Molecular cloning and expression analysis of the cell-wall invertase gene family in rice (Oryza sativa L.).
TextPresso Search Search textpresso for GIF1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0080062
Gene Ontology response to other organism( GO:0051707 )
beta-fructofuranosidase activity( GO:0004564 )
sucrose alpha-glucosidase activity( GO:0004575 )
cell wall( GO:0005618 )
carbohydrate metabolic process( GO:0005975 )
sucrose biosynthetic process( GO:0005986 )
sucrose catabolic process( GO:0005987 )
hydrolase activity( GO:0016787 )
apoplast( GO:0048046 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
endosperm development( GO:0009960 )
Trait Ontology glucose content( TO:0000300 )
invertase activity( TO:0000311 )
grain yield( TO:0000396 )
fructose content( TO:0006005 )
amylose content( TO:0000196 )
seed maturation( TO:0002661 )
sucrose content( TO:0000328 )
seed size( TO:0000391 )
grain weight( TO:0000590 )
amylopectin content( TO:0000097 )
endosperm color( TO:0000487 )
endosperm related trait( TO:0000575 )
chalky endosperm( TO:0000266 )
1000-dehulled grain weight( TO:0000592 )
spikelet number( TO:0000456 )
filled grain number( TO:0000447 )
seed set percent( TO:0000455 )
glume color( TO:0000221 )
starch grain shape( TO:0002656 )
seed length( TO:0000146 )
seed width( TO:0000149 )
seed thickness( TO:0000304 )
starch content( TO:0000696 )
seed quality( TO:0000162 )
Plant Ontology root tip( PO:0000025 )
carpel vascular system( PO:0005019 )
inflorescence internode( PO:0006326 )
pericarp( PO:0009084 )
endosperm( PO:0009089 )
endosperm development stage( PO:0007633 )
Related Strains
Phenotype images
Last updated
Dec 5, 2022