Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol GHD7
Gene Symbol Synonym Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7
Gene Name Synonym heading date 7, "Grain number, plant height, and heading date7", "GRAIN NUMBER, PLANT HEIGHT AND HEADING DATE 7", CCT domain-containing gene 26, CCT (CO, CO-LIKE and TOC1) domain protein 26, CCT domain protein 26, CCT MOTIF FAMILY (CMF) gene 8, Early heading 7
Allele Ghd7-0, Ghd7-0a, Ghd7-1, Ghd7-2, Ghd7-3, Ghd7-4, Ghd7-5, Ghd7-6, Ghd7-7, ghd7, eh7, ghd7-2
Chromosome No. 7
Explanation EU286800(Minghui 63 genomic), EU286801(Minghui 63 mRNA). OsI_25572. CCT domain protein. JF926532-JF926543 (Indica and Japonica). flowering time gene. TO:0020093: nitrogen content.
Trait Class Reproductive organ - Heading date
Character as QTL - Yield and productivity
cDNA Accession No. EU286800
MSU ID LOC_Os07g15770.1
RAP ID Os07g0261200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Cui Y., Zhu M., Xu Z., Xu Q.
Theor. Appl. Genet. 2019  132(6)  1887-1896
Assessment of the effect of ten heading time genes on reproductive transition and yield components in rice using a CRISPR/Cas9 system.
Cai M., Chen S., Wu M., Zheng T., Zhou L., Li C., Zhang H., Wang J., Xu X., Chai J., Ren Y., Guo X., Zhang X., Lei C., Cheng Z., Wang J., Jiang L., Zhai H., Wang H., Zhu S., Wan J.
Plant Cell Rep. 2019  38(5)  521-532
Early heading 7 interacts with DTH8, and regulates flowering time in rice.
Zhu C., Peng Q., Fu D., Zhuang D., Yu Y., Duan M., Xie W., Cai Y., Ouyang Y., Lian X., Wu C.
Plant Cell 2018  30(10)  2352-2367
The E3 Ubiquitin Ligase HAF1 Modulates Circadian Accumulation of EARLY FLOWERING3 to Control heading date in Rice under Long-Day Conditions.
Song S., Wang G., Hu Y., Liu H., Bai X., Qin R., Xing Y.
J. Exp. Bot. 2018  69(18)  4283-4293
OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.
Jiang D., Chen W., Dong J., Li J., Yang F., Wu Z., Zhou H., Wang W., Zhuang C.
J. Exp. Bot. 2018  69(7)  1533-1543
Overexpression of miR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.
Jiang P., Wang S., Zheng H., Li H., Zhang F., Su Y., Xu Z., Lin H., Qian Q., Ding Y.
New Phytol. 2018  219(1)  422-435
SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.
Jiang P., Wang S., Jiang H., Cheng B., Wu K., Ding Y.
Plant Physiol. 2018  176(4)  2761-2771
The COMPASS-Like Complex Promotes Flowering and Panicle Branching in Rice.
Wu W., Zhang Y., Zhang M., Zhan X., Shen X., Yu P., Chen D., Liu Q., Sinumporn S., Hussain K., Cheng S., Cao L.
Biochem. Biophys. Res. Commun. 2018  495(1)  1349-1355
The RICE CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.
Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.
Nat. Genet. 2018  50(2)  278-284
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.
Kim S.R., Torollo G., Yoon M.R., Kwak J., Lee C.K., Prahalada G.D., Choi I.R., Yeo U.S., Jeong O.Y., Jena K.K., Lee J.S.
Front Plant Sci 2018  9  1827
Loss-of-Function Alleles of <i>Heading date 1</i> (<i>Hd1</i>) Are Associated With Adaptation of Temperate <i>Japonica</i> Rice Plants to the Tropical Region.
Yang M., Lu K., Zhao F.J., Xie W., Ramakrishna P., Wang G., Du Q., Liang L., Sun C., Zhao H., Zhang Z., Liu Z., Tian J., Huang X.Y., Wang W., Dong H., Hu J., Ming L., Xing Y., Wang G., Xiao J., Salt D.E., Lian X.
Plant Cell 2018  30(11)  2720-2740
Genome-Wide Association Studies Reveal the Genetic Basis of Ionomic Variation in Rice.
Wu W., Zheng X.M., Chen D., Zhang Y., Ma W., Zhang H., Sun L., Yang Z., Zhao C., Zhan X., Shen X., Yu P., Fu Y., Zhu S., Cao L., Cheng S.
Plant Sci. 2017  260  60-69
OsCOL16, encoding a CONSTANS-like protein, represses flowering by up-regulating Ghd7 expression in rice.
Zhou H., Xia D., Zeng J., Jiang G., He Y.
Rice (N Y) 2017  10(1)  39
Dissecting combining ability effect in a rice NCII-III population provides insights into heterosis in indica-japonica cross.
Tan J., Wu F., Wan J.
Plant Signal Behav 2017  12(1)  e1267893
Flowering time regulation by the CONSTANS-like gene OsCOL10.
Jeong H.J., Yang J., Cho L.H., An G.
Plant Cell Rep. 2016  35(4)  905-20
OsVIL1 controls flowering time in rice by suppressing OsLF under short days and by inducing Ghd7 under long days.
Du Y., He W., Deng C., Chen X., Gou L., Zhu F., Guo W., Zhang J., Wang T.
PLoS ONE 2016  11(3)  e0150458
Flowering-Related RING Protein 1 (FRRP1) Regulates flowering time and Yield Potential by Affecting histone H2B Monoubiquitination in Rice (Oryza Sativa).
Kim S.R., Ramos J., Ashikari M., Virk P.S., Torres E.A., Nissila E., Hechanova S.L., Mauleon R., Jena K.K.
Rice (N Y) 2016  9(1)  12
Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
Tan J., Jin M., Wang J., Wu F., Sheng P., Cheng Z., Wang J., Zheng X., Chen L., Wang M., Zhu S., Guo X., Zhang X., Liu X., Wang C., Wang H., Wu C., Wan J.
Plant Cell Physiol. 2016  57(4)  798-812
OsCOL10, a CONSTANS-like Gene, Functions as a flowering time Repressor Downstream of Ghd7 in Rice.
Han S.H., Yoo S.C., Lee B.D., An G., Paek N.C.
Plant Cell Environ. 2015   
Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod.
Zhang L., Li Q., Dong H., He Q., Liang L., Tan C., Han Z., Yao W., Li G., Zhao H., Xie W., Xing Y.
Sci Rep 2015  5  7663
Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice.
Yoshitake Y., Yokoo T., Saito H., Tsukiyama T., Quan X., Zikihara K., Katsura H., Tokutomi S., Aboshi T., Mori N., Inoue H., Nishida H., Kohchi T., Teraishi M., Okumoto Y., Tanisaka T.
Sci Rep 2015  5  7709
The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice.
Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.
Planta 2015   
OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
Xu Q., Saito H., Hirose I., Katsura K., Yoshitake Y., Yokoo T., Tsukiyama T., Teraishi M., Tanisaka T., Okumoto Y.
Molecular Breeding 2014  33  813-819
The effects of the photoperiod-insensitive alleles, se13, hd1 and ghd7, on yield components in rice
Choi S.C., Lee S., Kim S.R., Lee Y.S., Liu C., Cao X., An G.
Plant Physiol. 2014  164(3)  1326-37
Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.
Gao H., Jin M., Zheng X.M., Chen J., Yuan D., Xin Y., Wang M., Huang D., Zhang Z., Zhou K., Sheng P., Ma J., Ma W., Deng H., Jiang L., Liu S., Wang H., Wu C., Yuan L., Wan J.
Proc. Natl. Acad. Sci. U.S.A. 2014   
Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice.
Kwon C.T., Koo B.H., Kim D., Yoo S.C., Paek N.C.
Mol. Cells 2014   
Casein Kinases I and 2alpha Phosphorylate Oryza Sativa Pseudo-Response Regulator 37 (OsPRR37) in Photoperiodic Flowering in Rice.
Fujino K., Yamanouchi U., Yano M.
Theor. Appl. Genet. 2013  126(3)  611-8
Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation.
Hori K., Ogiso-Tanaka E., Matsubara K., Yamanouchi U., Ebana K., Yano M.
Plant J. 2013  76(1)  36-46
Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response.
Yang Y., Peng Q., Chen G.X., Li X.H., Wu C.Y.
Mol Plant 2013  6(1)  202-15
OsELF3 is Involved in Circadian Clock Regulation for Promoting Flowering under Long-Day Conditions in Rice.
Koo B.H., Yoo S.C., Park J.W., Kwon C.T., Lee B.D., An G., Zhang Z., Li J., Li Z., Paek N.C.
Mol Plant 2013  6(6)  1877-88
Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Zhao J., Huang X., Ouyang X., Chen W., Du A., Zhu L., Wang S., Deng X.W., Li S.
PLoS ONE 2012  7(8)  e43705
OsELF3-1, an Ortholog of Arabidopsis EARLY FLOWERING 3, Regulates Rice Circadian Rhythm and Photoperiodic Flowering.
Saito H., Ogiso-Tanaka E., Okumoto Y., Yoshitake Y., Izumi H., Yokoo T., Matsubara K., Hori K., Yano M., Inoue H., Tanisaka T.
Plant Cell Physiol. 2012  53(4)  717-28
Ef7 Encodes an ELF3-like Protein and Promotes Rice Flowering by Negatively Regulating the Floral Repressor Gene Ghd7 under Both Short- and Long-Day Conditions.
Cockram J., Thiel T., Steuernagel B., Stein N., Taudien S., Paul C Bailey, Donal M O'Sullivan
PLoS ONE 2012  7(9)  e45307
Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae.
Sun C., Fang J., Zhao T., Xu B., Zhang F., Liu L., Tang J., Zhang G., Deng X., Chen F., Qian Q., Cao X., Chu C.
Plant Cell 2012  24(8)  3235-47
The histone methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice.
Lu,L., Yan,W., Xue,W., Shao,D. and Xing,Y.
PLoS ONE 2012  7 (5)  E34021
Evolution and association analysis of ghd7 in rice
Shibaya T., Nonoue Y., Ono N., Yamanouchi U., Hori K., Yano M.
Theor. Appl. Genet. 2011  123(7)  1133-43
Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditions.
Miura K., Ashikari M., Matsuoka M.
Trends Plant Sci. 2011  16(6)  319-26
The role of QTLs in the breeding of high-yielding rice.
Li C., Huang L., Xu C., Zhao Y., Zhou D.X.
PLoS ONE 2011  6(7)  e21789
Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice.
Ebana K,Shibaya T,Wu J,Matsubara K,Kanamori H,Yamane H,Yamanouchi U,Mizubayashi T,Kono I,Shomura A,Ito S,Ando T,Hori K,Matsumoto T,Yano M
Theor. Appl. Genet. 2011  122(6)  1199-210
Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivars.
Itoh H,Nonoue Y,Yano M,Izawa T
Nat Genet 2010  42(7)  635-8
A pair of floral regulators sets critical day length for Hd3a florigen expression in rice.
Komiya R., Yokoi S., Shimamoto K.
Development 2009  136(20)  3443-50
A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.
Xue,W., Xing,Y., Weng,X., Zhao,Y., Tang,W., Wang,L., Zhou,H., Yu,S., Xu,C., Li,X. and Zhang,Q.
Nat Genet 2008  40(6)  761-767
Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice
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DB Reference
Gramene ID -
Gene Ontology response to light stimulus( GO:0009416 )
photoperiodism( GO:0009648 )
photoperiodism, flowering( GO:0048573 )
negative regulation of long-day photoperiodism, flowering( GO:0048579 )
Trait Ontology grain number( TO:0002759 )
days to heading( TO:0000137 )
inflorescence branching( TO:0000050 )
secondary branch number( TO:0000557 )
filled grain number( TO:0000447 )
plant height( TO:0000207 )
photoperiod sensitivity( TO:0000229 )
flowering time( TO:0002616 )
panicle number( TO:0000152 )
Plant Ontology -
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Last updated
Jan 28, 2020

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